Publications by authors named "Thomas Colby"

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Fleischner Society: Glossary of Terms for Thoracic Imaging.
Alexander A Bankier, Heber MacMahon, Thomas Colby, Pierre Alain Gevenois, Jin Mo Goo, Ann N C Leung, David A Lynch, Cornelia M Schaefer-Prokop, Noriyuki Tomiyama, William D Travis

Radiology· February 2024

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Serine ADPr on histones and PARP1 is a cellular target of ester-linked ubiquitylation.
Andreas Kolvenbach, Maria Dilia Palumbieri, Thomas Colby, Diyaraj Nadarajan, Remo Bode

Nat Chem Biol· November 2025

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Publisher Correction: Serine ADPr on histones and PARP1 is a cellular target of ester-linked ubiquitylation.
Andreas Kolvenbach, Maria Dilia Palumbieri, Thomas Colby, Diyaraj Nadarajan, Remo Bode

Nat Chem Biol· November 2025

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Untargeted Proteomics Identifies Plant Substrates of the Bacterial-Derived ADP-Ribosyltransferase AvrRpm1.
Simranjit Kaur, Thomas Colby, Domenika Thieme, Carsten Proksch, Susanne Matschi

Plant Direct· November 2025

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Standardized Clinical Terms and Definitions for Interstitial Lung Disease: A Consensus Statement from the Fleischner Society.
Christopher J Ryerson, Alexander Bankier, Mary Beth Beasley, Kevin Brown, Thomas Colby

Am J Respir Crit Care Med· October 2025

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Phosphoribosyl ubiquitination of SNARE proteins regulates autophagy during Legionella infection.
Rukmini Mukherjee, Anshu Bhattacharya, Ines Tomaskovic, João Mello-Vieira, Melinda Elaine Brunstein, Thomas Colby

EMBO J· August 2025

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Serine ubiquitination of SQSTM1 regulates NFE2L2-dependent redox homeostasis.
Rukmini Mukherjee, Anshu Bhattacharya, João Mello-Vieira, Santosh Kumar Kuncha, Marina Hoffmann, Thomas Colby

Autophagy· February 2025

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Guidelines for Pathologic Diagnosis of Mesothelioma: 2023 Update of the Consensus Statement From the International Mesothelioma Interest Group.
Aliya N Husain, David B Chapel, Richard Attanoos, Mary Beth Beasley, Luka Brcic, Thomas V Colby

Arch Pathol Lab Med· November 2024

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Pulmonary Pathology Society Survey on Practice Approaches in the Histologic Diagnosis of Fibrotic Interstitial Lung Disease: Consensus and Opportunities.
Maxwell L Smith, Mari Mino-Kenudson, Richard J Butterfield, Sanja Dacic, Thomas V Colby

Arch Pathol Lab Med· February 2024

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Modular antibodies reveal DNA damage-induced mono-ADP-ribosylation as a second wave of PARP1 signaling.
Edoardo José Longarini, Helen Dauben, Carolina Locatelli, Anne R Wondisford, Rebecca Smith, Thomas Colby

Mol Cell· May 2023

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Diffuse Pulmonary Meningotheliomatosis: Clinic-Pathologic Entity or Indolent Metastasis from Meningioma (or Both)?
Laura Melocchi, Giulio Rossi, Mirca Valli, Maria Cecilia Mengoli, Michele Mondoni, Thomas V Colby

Diagnostics (Basel)· February 2023

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European Respiratory Society guidelines on transbronchial lung cryobiopsy in the diagnosis of interstitial lung diseases.
Daniël A Korevaar, Sara Colella, Markus Fally, Juliette Camuset, Thomas V Colby

Eur Respir J· November 2022

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Polarization-Sensitive Endobronchial Optical Coherence Tomography for Microscopic Imaging of Fibrosis in Interstitial Lung Disease.
Sreyankar Nandy, Sarita R Berigei, Colleen M Keyes, Ashok Muniappan, Hugh G Auchincloss, Thomas V Colby

Am J Respir Crit Care Med· October 2022

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Impact of Lung Biopsy Information on Treatment Strategy of Patients with Interstitial Lung Diseases.
Sara Tomassetti, Claudia Ravaglia, Silvia Puglisi, Jay H Ryu, Thomas V Colby

Ann Am Thorac Soc· May 2022

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Assessing Pathologic Response in Resected Lung Cancers: Current Standards, Proposal for a Novel Pathologic Response Calculator Tool, and Challenges in Practice.
Anjali Saqi, Kevin O Leslie, Andre L Moreira, Sylvie Lantuejoul, Catherine Ann Shu, Thomas V Colby

JTO Clin Res Rep· May 2022

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Diagnosis of Hypersensitivity Pneumonitis: Review and Summary of American College of Chest Physicians Statement.
Soo-Ryum Yang, Mary B Beasley, Andrew Churg, Thomas V Colby, Evans R Fernández Pérez

Am J Surg Pathol· April 2022

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Comparison of Forceps, Cryoprobe, and Thoracoscopic Lung Biopsy for the Diagnosis of Interstitial Lung Disease - The CHILL Study.
Momen M Wahidi, Angela Christine Argento, Kamran Mahmood, Scott L Shofer, Coral Giovacchini, Thomas Colby

Respiration· April 2022

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Reply to Kalverda : Endobronchial Optical Coherence Tomography: Shining New Light on Diagnosing Usual Interstitial Pneumonitis?
Sreyankar Nandy, Rebecca A Raphaely, Ashok Muniappan, Angela Shih, Benjamin W Roop, Thomas V Colby

Am J Respir Crit Care Med· April 2022

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The Spectrum of Airway Involvement in Inflammatory Bowel Disease.
Philippe Camus, Thomas V Colby

Clin Chest Med· March 2022

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Diagnostic Yield of Transbronchial Lung Cryobiopsy Compared to Transbronchial Forceps Biopsy in Patients with Sarcoidosis in a Prospective, Randomized, Multicentre Cross-Over Trial.
Maik Häntschel, Ralf Eberhardt, Christoph Petermann, Wolfgang Gesierich, Kaid Darwiche, Thomas V Colby

J Clin Med· December 2021

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Bronchoalveolar lavage and lung biopsy in connective tissue diseases, to do or not to do?
Sara Tomassetti, Thomas V Colby, Athol U Wells, Venerino Poletti, Ulrich Costabel

Ther Adv Musculoskelet Dis· December 2021

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Small Airway Reduction and Fibrosis Is an Early Pathologic Feature of Idiopathic Pulmonary Fibrosis.
Kohei Ikezoe, Tillie-Louise Hackett, Samuel Peterson, Dante Prins, Cameron J Hague, Thomas V Colby

Am J Respir Crit Care Med· November 2021

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Diagnostic Accuracy of Endobronchial Optical Coherence Tomography for the Microscopic Diagnosis of Usual Interstitial Pneumonia.
Sreyankar Nandy, Rebecca A Raphaely, Ashok Muniappan, Angela Shih, Benjamin W Roop, Thomas V Colby

Am J Respir Crit Care Med· November 2021

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Serine-ubiquitination regulates Golgi morphology and the secretory pathway upon Legionella infection.
Yaobin Liu, Rukmini Mukherjee, Florian Bonn, Thomas Colby, Ivan Matic

Cell Death Differ· October 2021

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Structural basis for protein glutamylation by the Legionella pseudokinase SidJ.
Michael Adams, Rahul Sharma, Thomas Colby, Felix Weis, Ivan Matic

Nat Commun· October 2021

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