Publications by authors named "Thomas Metz"

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Xanthohumol Alters Gut Microbiota Metabolism and Bile Acid Dynamics in Gastrointestinal Simulation Models of Eubiotic and Dysbiotic States.
Paige E Jamieson, Nicholas J Reichart, Claudia S Maier, Thomas J Sharpton, Ryan Bradley, Thomas O Metz

Int J Mol Sci· November 2025

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Mid-day photomixotrophy by spp. and implications for the C content of hot spring cyanobacterial mats.
James J Moran, Peter D Ilhardt, Sneha P Couvillion, Mary S Lipton, Thomas O Metz

Appl Environ Microbiol· October 2025

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Challenges and Opportunities in State-of-the-Art Proteomics Analysis for Biomarker Development From Plasma Extracellular Vesicles.
Panshak P Dakup, Ivo Diaz Ludovico, Youngki You, Chaitra Rao, Javier Flores, Thomas O Metz

Proteomics· September 2025

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Genetic mapping of complement system proteins for islet autoimmunity in children with high risk of T1D.
Xiaowei Hu, Bobbie-Jo M Webb-Robertson, Hemang M Parikh, Ernesto S Nakayasu, Suna Onengut-Gumuscu, Thomas O Metz

Commun Biol· September 2025

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Assessing the Impact of Measurement Precision on Metabolite Identification Probability in Multidimensional Mass Spectrometry-Based, Reference-Free Metabolomics.
Christine H Chang, Sydney C Schwartz, Alexandria K Im, Kent J Bloodsworth, Bobbie-Jo M Webb-Robertson, Thomas O Metz

Anal Chem· July 2025

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Insulin post-transcriptional regulation via PARP12-mediated ADP- ribosylation.
Soumyadeep Sarkar, Fangjia Li, Youngki You, Emily C Elliott, Kevin J Zemaitis, Thomas O Metz

Res Sq· May 2025

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Metabolomic and transcriptomic remodeling of bone marrow myeloid cells in response to maternal obesity.
Yem J Alharithi, Elysse A Phillips, Tim D Wilson, Sneha P Couvillion, Carrie D Nicora, Thomas O Metz

Am J Physiol Endocrinol Metab· February 2025

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Dysregulation of lung epithelial cell homeostasis and immunity contributes to Middle East respiratory syndrome coronavirus disease severity.
Amy C Sims, Alexandra Schäfer, Kenichi Okuda, Sarah R Leist, Jacob F Kocher, Thomas O Metz

mSphere· February 2025

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Genome-wide mapping of complement system proteins for islet autoimmunity in the DAISY and TEDDY children.
Xiaowei Hu, Bobbie-Jo M Webb-Robertson, Hemang M Parikh, Ernesto S Nakayasu, Suna Onengut-Gumuscu, Thomas O Metz

Res Sq· February 2025

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Introducing "Identification Probability" for Automated and Transferable Assessment of Metabolite Identification Confidence in Metabolomics and Related Studies.
Thomas O Metz, Christine H Chang, Vasuk Gautam, Afia Anjum, Siyang Tian

Anal Chem· January 2025

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Data from a multi-year targeted proteomics study of a longitudinal birth cohort of type 1 diabetes.
Lisa M Bramer, Ernesto S Nakayasu, Javier E Flores, Jennifer E Van Eyk, Michael J MacCoss, Thomas O Metz

Sci Data· January 2025

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Exploring new frontiers in type 1 diabetes through advanced mass-spectrometry-based molecular measurements.
Soumyadeep Sarkar, Xueyun Zheng, Geremy C Clair, Yu Mi Kwon, Youngki You, Thomas O Metz

Trends Mol Med· December 2024

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Associations between SARS-CoV-2 Infection or COVID-19 Vaccination and Human Milk Composition: A Multi-Omics Approach.
Sneha P Couvillion, Ernesto S Nakayasu, Bobbie-Jo M Webb-Robertson, Isabella H Yang, Josie G Eder, Thomas O Metz

J Nutr· December 2024

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Multiplatform metabolomic interlaboratory study of a whole human stool candidate reference material from omnivore and vegan donors.
Abraham Kuri Cruz, Marina Amaral Alves, Thorkell Andresson, Amanda L Bayless, Kent J Bloodsworth, Thomas O Metz

Metabolomics· November 2024

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An outbreak of renal failure in asian dogs due to s-triazine adulteration of pet food raw material: Analysis of unique, green kidney stones formed as a result.
James A Campbell, James A Franz, Leo J Romanczyk, David J Wunschel, Thomas O Metz

Food Chem Toxicol· September 2024

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The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data.
Dominik Kopczynski, Christer S Ejsing, Jeffrey G McDonald, Takeshi Bamba, Erin S Baker, Thomas O Metz

J Lipid Res· September 2024

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Metabolomic and transcriptomic remodeling of bone marrow myeloid cells in response to maternal obesity.
Yem J Alharithi, Elysse A Phillips, Tim D Wilson, Sneha P Couvillion, Carrie D Nicora, Thomas O Metz

bioRxiv· August 2024

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Elucidating the Gas-Phase Behavior of Nitazene Analog Protomers Using Structures for Lossless Ion Manipulations Ion Mobility-Orbitrap Mass Spectrometry.
Adam L Hollerbach, Vivian S Lin, Yehia M Ibrahim, Robert G Ewing, Thomas O Metz

J Am Soc Mass Spectrom· July 2024

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High-Resolution Mass Spectrometry for Human Exposomics: Expanding Chemical Space Coverage.
Yunjia Lai, Jeremy P Koelmel, Douglas I Walker, Elliott J Price, Stefano Papazian, Thomas O Metz

Environ Sci Technol· July 2024

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Introducing 'identification probability' for automated and transferable assessment of metabolite identification confidence in metabolomics and related studies.
Thomas O Metz, Christine H Chang, Vasuk Gautam, Afia Anjum, Siyang Tian

bioRxiv· July 2024

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Patient-Derived Tumor Xenograft Study with CDK4/6 Inhibitor Plus AKT Inhibitor for the Management of Metastatic Castration-Resistant Prostate Cancer.
Adam M Kase, Justyna Gleba, James L Miller, Erin Miller, Joachim Petit, Thomas M Metz

Mol Cancer Ther· June 2024

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Identification of Unique Fragmentation Patterns of Fentanyl Analog Protomers Using Structures for Lossless Ion Manipulations Ion Mobility-Orbitrap Mass Spectrometry.
Adam L Hollerbach, Yehia M Ibrahim, Vivian S Lin, Katherine J Schultz, Adam P Huntley, Thomas O Metz

J Am Soc Mass Spectrom· April 2024

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A compendium of multi-omics data illuminating host responses to lethal human virus infections.
Amie J Eisfeld, Lindsey N Anderson, Shufang Fan, Kevin B Walters, Peter J Halfmann, Thomas O Metz

Sci Data· April 2024

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DEIMoS GUI: An Open-Source User Interface for a High-Dimensional Mass Spectrometry Data Processing Tool.
Marjolein T Oostrom, Sean M Colby, Thomas O Metz

J Chem Inf Model· March 2024

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metabCombiner 2.0: Disparate Multi-Dataset Feature Alignment for LC-MS Metabolomics.
Hani Habra, Jennifer L Meijer, Tong Shen, Oliver Fiehn, David A Gaul, Thomas O Metz

Metabolites· February 2024

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