Publications by authors named "Toby Gibson"

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Unveiling the Complexity of cis-Regulation Mechanisms in Kinases: A Comprehensive Analysis.
Alvaro M Navarro, Macarena Alonso, Elizabeth Martínez-Pérez, Tamas Lazar, Toby J Gibson

Proteins· March 2025

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NpeA is a secreted Type IV effector containing an N-WASP-binding short linear motif that promotes niche formation.
Agostina Giménez, Mariela G Del Giudice, Paula V López, Francisco Guaimas, Hugo Sámano-Sánchez, Toby J Gibson

mBio· July 2024

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Systematic discovery of protein interaction interfaces using AlphaFold and experimental validation.
Chop Yan Lee, Dalmira Hubrich, Julia K Varga, Christian Schäfer, Mareen Welzel, Toby J Gibson

Mol Syst Biol· February 2024

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Linear motifs regulating protein secretion, sorting and autophagy in Leishmania parasites are diverged with respect to their host equivalents.
Andras Zeke, Toby J Gibson, Laszlo Dobson

PLoS Comput Biol· February 2024

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ELM-the Eukaryotic Linear Motif resource-2024 update.
Manjeet Kumar, Sushama Michael, Jesús Alvarado-Valverde, András Zeke, Tamas Lazar, Toby J Gibson

Nucleic Acids Res· January 2024

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LeishMANIAdb: a comparative resource for Leishmania proteins.
Gábor E Tusnády, András Zeke, Zsófia E Kálmán, Marie Fatoux, Sylvie Ricard-Blum, Toby J Gibson

Database (Oxford)· October 2023

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Using Linear Motif Database Resources to Identify SH2 Domain Binders.
Hugo Sámano-Sánchez, Toby J Gibson, Lucía B Chemes

Methods Mol Biol· September 2023

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Pipeline for transferring annotations between proteins beyond globular domains.
Elizabeth Martínez-Pérez, Mátyás Pajkos, Silvio C E Tosatto, Toby J Gibson, Zsuzsanna Dosztanyi

Protein Sci· July 2023

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A conserved motif in the disordered linker of human MLH1 is vital for DNA mismatch repair and its function is diminished by a cancer family mutation.
Karla Wolf, Jan Kosinski, Toby J Gibson, Nicole Wesch, Volker Dötsch

Nucleic Acids Res· July 2023

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Structural basis for tunable affinity and specificity of LxCxE-dependent protein interactions with the retinoblastoma protein family.
Sivasankar Putta, Lucia Alvarez, Stephan Lüdtke, Peter Sehr, Gerd A Müller, Toby J Gibson

Structure· September 2022

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PCARE requires coiled coil, RP62 kinase-binding and EVH1 domain-binding motifs for ciliary expansion.
Tess A V Afanasyeva, Yan-Ting Schnellbach, Toby J Gibson, Ronald Roepman, Rob W J Collin

Hum Mol Genet· August 2022

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The Eukaryotic Linear Motif resource: 2022 release.
Manjeet Kumar, Sushama Michael, Jesús Alvarado-Valverde, Bálint Mészáros, Hugo Sámano-Sánchez, Toby J Gibson

Nucleic Acids Res· January 2022

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How to Annotate and Submit a Short Linear Motif to the Eukaryotic Linear Motif Resource.
Marc Gouw, Jesús Alvarado-Valverde, Jelena Čalyševa, Francesca Diella, Manjeet Kumar, Toby J Gibson

Methods Mol Biol· March 2021

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Divergent Evolution of a Protein-Protein Interaction Revealed through Ancestral Sequence Reconstruction and Resurrection.
Louise Laursen, Jelena Čalyševa, Toby J Gibson, Per Jemth

Mol Biol Evol· January 2021

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PED in 2021: a major update of the protein ensemble database for intrinsically disordered proteins.
Tamas Lazar, Elizabeth Martínez-Pérez, Federica Quaglia, András Hatos, Lucía B Chemes, Toby J Gibson

Nucleic Acids Res· January 2021

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Short linear motif candidates in the cell entry system used by SARS-CoV-2 and their potential therapeutic implications.
Bálint Mészáros, Hugo Sámano-Sánchez, Jesús Alvarado-Valverde, Jelena Čalyševa, Elizabeth Martínez-Pérez, Toby J Gibson

Sci Signal· January 2021

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Mimicry of Short Linear Motifs by Bacterial Pathogens: A Drugging Opportunity.
Hugo Sámano-Sánchez, Toby J Gibson

Trends Biochem Sci· June 2020

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CiliaCarta: An integrated and validated compendium of ciliary genes.
Teunis J P van Dam, Julie Kennedy, Robin van der Lee, Erik de Vrieze, Kirsten A Wunderlich, Toby J Gibson

PLoS One· January 2020

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ELM-the eukaryotic linear motif resource in 2020.
Manjeet Kumar, Marc Gouw, Sushama Michael, Hugo Sámano-Sánchez, Rita Pancsa, Toby J Gibson

Nucleic Acids Res· January 2020

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An intrinsically disordered proteins community for ELIXIR.
Norman E Davey, M Madan Babu, Martin Blackledge, Alan Bridge, Salvador Capella-Gutierrez, Toby J Gibson

F1000Res· January 2020

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Modulation of HIV-1 gene expression by binding of a ULM motif in the Rev protein to UHM-containing splicing factors.
Marta Pabis, Lorenzo Corsini, Michelle Vincendeau, Konstantinos Tripsianes, Toby J Gibson

Nucleic Acids Res· May 2019

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Control of mitotic chromosome condensation by the fission yeast transcription factor Zas1.
Christoph Schiklenk, Boryana Petrova, Marc Kschonsak, Markus Hassler, Carlo Klein, Toby J Gibson

J Cell Biol· July 2018

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Short linear motif core and flanking regions modulate retinoblastoma protein binding affinity and specificity.
Nicolás Palopoli, Nicolás S González Foutel, Toby J Gibson, Lucía B Chemes

Protein Eng Des Sel· March 2018

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CTCF-Mediated Chromatin Loops between Promoter and Gene Body Regulate Alternative Splicing across Individuals.
Mariana Ruiz-Velasco, Manjeet Kumar, Mang Ching Lai, Pooja Bhat, Ana Belen Solis-Pinson, Toby J Gibson

Cell Syst· December 2017

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The Gene Ontology of eukaryotic cilia and flagella.
Paola Roncaglia, Teunis J P van Dam, Karen R Christie, Lora Nacheva, Grischa Toedt, Toby J Gibson

Cilia· November 2017

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