Publications by authors named "Toenis Org"

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A novel framework for assessing causal effect of microbiome on health: long-term antibiotic usage as an instrument.
Nele Taba, Krista Fischer, Estonian Biobank Research Team, Elin Org, Oliver Aasmets

Gut Microbes· December 2025

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A hidden confounder for microbiome studies: medications used years before sample collection.
Oliver Aasmets, Nele Taba, Kertu Liis Krigul, Reidar Andreson, , Elin Org

mSystems· October 2025

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RNA sequencing of mRNA 5'-ends reveals regulators of bovine embryonic genome activation.
Barış Yaşar, Nina Boskovic, Tõnis Org, Juha Kere, Ants Kurg

BMC Genomics· October 2025

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Precision nutrition across climates: decoding diet, tradition, and genomic adaptations from South Asia to the Arctic.
Ajai Kumar Pathak, Anna Kolesnikova, Deepika Uttam Sambreker, Elin Org, Toomas Kivisild

Front Nutr· September 2025

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Oxygen level alters energy metabolism in bovine preimplantation embryos.
Nina Boskovic, Marilin Ivask, Gamze Yazgeldi Gunaydin, Barış Yaşar, Shintaro Katayama, Tõnis Org

Sci Rep· April 2025

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The Estonian Biobank's journey from biobanking to personalized medicine.
Lili Milani, Maris Alver, Sven Laur, Sulev Reisberg, Toomas Haller, Georgi Hudjashov, Elin Org

Nat Commun· April 2025

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The reproductive tract microbiome in women with polycystic ovary syndrome and across different menstrual cycle phases.
S Lee, O Aasmets, R K Arffman, J Laru, H R Rossi, E Org

Hum Reprod· March 2025

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Fecal microbial load is a major determinant of gut microbiome variation and a confounder for disease associations.
Suguru Nishijima, Evelina Stankevic, Oliver Aasmets, Thomas S B Schmidt, Naoyoshi Nagata, Elin Org

Cell· January 2025

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Effects of data transformation and model selection on feature importance in microbiome classification data.
Zuzanna Karwowska, Oliver Aasmets, , Tomasz Kosciolek, Elin Org

Microbiome· January 2025

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Molecular cloning of PRD-like homeobox genes expressed in bovine oocytes and early IVF embryos.
Barış Yaşar, Nina Boskovic, Marilin Ivask, Jere Weltner, Eeva-Mari Jouhilahti, Tõnis Org

BMC Genomics· November 2024

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RNA mA methyltransferase activator affects anxiety-related behaviours, monoamines and striatal gene expression in the rat.
Margus Kanarik, Kristi Liiver, Marianna Norden, Indrek Teino, Tõnis Org

Acta Neuropsychiatr· October 2024

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Correction: Gut microbiome in endometriosis: a cohort study on 1000 individuals.
Inmaculada Pérez-Prieto, Eva Vargas, Eduardo Salas-Espejo, Kreete Lüll, Analuce Canha-Gouveia, Elin Org

BMC Med· October 2024

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Comorbidities confound metabolomics studies of human disease.
Madis Jaagura, Jaanika Kronberg, Anu Reigo, Oliver Aasmets, Tiit Nikopensius, Elin Org

Sci Rep· October 2024

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Cell-Free Microbial DNA Analysis: Effects of Blood Plasma and Serum Quantity, Biobanking Protocols, and Isolation Kits.
Darja Nikitina, Rokas Lukosevicius, Deimante Tilinde, Tomas Muskieta, Johannes Roksund Hov, Elin Org

Biopreserv Biobank· August 2024

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Association of Accelerometer-Determined Physical Activity and Sedentary Behavior With the Gut Microbiome in Middle-Aged Women: A Compositional Data Approach.
Inmaculada Pérez-Prieto, Jairo H Migueles, Nerea M Molina, Alberto Sola-Leyva, Eduardo Salas-Espejo, Elin Org

Scand J Med Sci Sports· July 2024

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A history of repeated antibiotic usage leads to microbiota-dependent mucus defects.
Kertu Liis Krigul, Rachel H Feeney, Supapit Wongkuna, Oliver Aasmets, Sandra M Holmberg, Tõnis Org, Elin Org

Gut Microbes· July 2024

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Gut bacteriome and mood disorders in women with PCOS.
S Lee, M V Tejesvi, E Hurskainen, O Aasmets, J Plaza-Díaz, E Org

Hum Reprod· June 2024

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Positive selection in the genomes of two Papua New Guinean populations at distinct altitude levels.
Mathilde André, Nicolas Brucato, Georgi Hudjasov, Vasili Pankratov, Danat Yermakovich, Tõnis Org

Nat Commun· April 2024

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Field Testing the "Avoid the Needle" Intervention for Persons at Risk for Transitioning to Injecting Drug Use in Tallinn, Estonia and New York City, USA.
Don C Des Jarlais, Courtney McKnight, Chenziheng Allen Weng, Jonathan Feelemyer, Susan Tross, Greete Org

AIDS Behav· November 2023

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Uterine Microbiome: Does the Sampling Technique Matter?
Kreete Lüll, Elin Org

Semin Reprod Med· September 2023

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Evaluating the clinical relevance of the enterotypes in the Estonian microbiome cohort.
Oliver Aasmets, Kertu Liis Krigul, Elin Org

Front Genet· August 2022

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NMR Assignment of Methyl Groups in Immobilized Proteins Using Multiple-Bond C Homonuclear Transfers, Proton Detection, and Very Fast MAS.
Piotr Paluch, Rafal Augustyniak, Mai-Liis Org, Kalju Vanatalu, Ats Kaldma

Front Mol Biosci· March 2022

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Differences in microbial profile of endometrial fluid and tissue samples in women with in vitro fertilization failure are driven by Lactobacillus abundance.
Kreete Lüll, Merli Saare, Maire Peters, Ekaterina Kakhiani, Anastasia Zhdanova, Elin Org

Acta Obstet Gynecol Scand· February 2022

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Gut metagenome associations with extensive digital health data in a volunteer-based Estonian microbiome cohort.
Oliver Aasmets, Kertu Liis Krigul, Kreete Lüll, Andres Metspalu, Elin Org

Nat Commun· February 2022

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