Publications by authors named "Torsten Seemann"

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An ISO-certified genomics workflow for identification and surveillance of antimicrobial resistance.
Norelle L Sherry, Kristy A Horan, Susan A Ballard, Anders Gonҫalves da Silva, Claire L Gorrie, Mark B Schultz, Kerrie Stevens, Mary Valcanis, Michelle L Sait, Timothy P Stinear

Nat Commun· January 2023

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Communicable diseases genomics network: promoting and harmonising pathogen genomics implementation for public health in Australia.
Chantel Lin, Amy V Jennison, Lex E X Leong, David J Speers, Ella M Meumann, Torsten Seemann

Lancet Reg Health West Pac· October 2025

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Transposon-directed insertion-site sequencing (TraDIS) analysis of using nanopore sequencing and a WebAssembly analysis platform.
Alexandra L Krause, Wytamma Wirth, Adrianna M Turner, Louise Judd, Lucy Li, Torsten Seemann

Microbiol Spectr· July 2025

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Genomics for antimicrobial resistance-progress and future directions.
Norelle L Sherry, Jean Y H Lee, Stefano G Giulieri, Christopher H Connor, Kristy Horan, Torsten Seemann

Antimicrob Agents Chemother· May 2025

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Effects of Decentralized Sequencing on National Listeria monocytogenes Genomic Surveillance, Australia, 2016-2023.
Patiyan Andersson, Sally Dougall, Karolina Mercoulia, Kristy A Horan, Torsten Seemann

Emerg Infect Dis· May 2025

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Publisher Correction: Parameters for one health genomic surveillance of Escherichia coli from Australia.
Anne E Watt, Max L Cummins, Celeste M Donato, Wytamma Wirth, Ashleigh F Porter, Torsten Seemann

Nat Commun· April 2025

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Molecular Epidemiology of SARS-CoV-2 in Bangladesh.
Abu Sayeed Mohammad Mahmud, Patiyan Andersson, Dieter Bulach, Sebastian Duchene, Anders Goncalves da Silva, Torsten Seemann

Viruses· April 2025

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Implementing a national programme of pathogen genomics for public health: the Australian Pathogen Genomics Program (AusPathoGen).
Jessica R Webb, Patiyan Andersson, Eby Sim, Alireza Zahedi, Angela Donald, Torsten Seemann

Lancet Microbe· March 2025

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Rapid, reference-free identification of bacterial pathogen transmission using optimized split -mer analysis.
Christopher H Connor, Charlie K Higgs, Kristy Horan, Jason C Kwong, M Lindsay Grayson, Torsten Seemann

Microb Genom· March 2025

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Parameters for one health genomic surveillance of Escherichia coli from Australia.
Anne E Watt, Max L Cummins, Celeste M Donato, Wytamma Wirth, Ashleigh F Porter, Torsten Seemann

Nat Commun· January 2025

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BenchAMRking: a Galaxy-based platform for illustrating the major issues associated with current antimicrobial resistance (AMR) gene prediction workflows.
Nikolaos Strepis, Dennis Dollee, Donny Vrins, Kevin Vanneste, Bert Bogaerts, Torsten Seemann

BMC Genomics· January 2025

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Exploring SNP filtering strategies: the influence of strict vs soft core.
Mona L Taouk, Leo A Featherstone, George Taiaroa, Torsten Seemann, Danielle J Ingle

Microb Genom· January 2025

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Rifaximin prophylaxis causes resistance to the last-resort antibiotic daptomycin.
Adrianna M Turner, Lucy Li, Ian R Monk, Jean Y H Lee, Danielle J Ingle, Torsten Seemann

Nature· November 2024

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Benchmarking reveals superiority of deep learning variant callers on bacterial nanopore sequence data.
Michael B Hall, Ryan R Wick, Louise M Judd, An N Nguyen, Eike J Steinig, Torsten Seemann

Elife· October 2024

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Marine sponge microbe provides insights into evolution and virulence of the tubercle bacillus.
Sacha J Pidot, Stephan Klatt, Louis S Ates, Wafa Frigui, Fadel Sayes, Torsten Seemann

PLoS Pathog· August 2024

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High performance source attribution using genomics-based machine learning classification.
Andrew H Buultjens, Koen Vandelannoote, Karolina Mercoulia, Susan Ballard, Clare Sloggett, Torsten Seemann

Appl Environ Microbiol· March 2024

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Genomic surveillance for antimicrobial resistance - a One Health perspective.
Steven P Djordjevic, Veronica M Jarocki, Torsten Seemann, Max L Cummins, Anne E Watt

Nat Rev Genet· February 2024

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High-performance enrichment-based genome sequencing to support the investigation of hepatitis A virus outbreaks.
Sara E Zufan, Karolina Mercoulia, Jason C Kwong, Louise M Judd, Benjamin P Howden, Torsten Seemann

Microbiol Spectr· January 2024

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The two-component system WalKR provides an essential link between cell wall homeostasis and DNA replication in .
Liam K R Sharkey, Romain Guerillot, Calum J Walsh, Adrianna M Turner, Jean Y H Lee, Torsten Seemann

mBio· December 2023

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Bioinformatic investigation of discordant sequence data for SARS-CoV-2: insights for robust genomic analysis during pandemic surveillance.
Sara E Zufan, Katherine A Lau, Angela Donald, Tuyet Hoang, Charles S P Foster, Torsten Seemann

Microb Genom· November 2023

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A statistical genomics framework to trace bacterial genomic predictors of clinical outcomes in Staphylococcus aureus bacteremia.
Stefano G Giulieri, Romain Guérillot, Natasha E Holmes, Sarah L Baines, Abderrahman Hachani, Torsten Seemann

Cell Rep· September 2023

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The importance of utilizing travel history metadata for informative phylogeographical inferences: a case study of early SARS-CoV-2 introductions into Australia.
Ashleigh F Porter, Leo Featherstone, Courtney R Lane, Norelle L Sherry, Monica L Nolan, Torsten Seemann

Microb Genom· August 2023

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Integrative omics identifies conserved and pathogen-specific responses of sepsis-causing bacteria.
Andre Mu, William P Klare, Sarah L Baines, C N Ignatius Pang, Romain Guérillot, Torsten Seemann

Nat Commun· March 2023

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Phylogenomic investigation of an outbreak of fluoroquinolone-resistant subsp. serovar Paratyphi A in Phnom Penh, Cambodia.
Rutaiwan Dusadeepong, Gauthier Delvallez, Sokleaph Cheng, Soda Meng, Navin Sreng, Torsten Seemann

Microb Genom· March 2023

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Improved Genome Sequence of Australian Methicillin-Resistant Staphylococcus aureus Strain JKD6159.
Ryan R Wick, Louise M Judd, Ian R Monk, Torsten Seemann, Timothy P Stinear

Microbiol Resour Announc· February 2023

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