Publications by authors named "Udo Stenzel"

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Genetic history of an archaic hominin group from Denisova Cave in Siberia.
David Reich, Richard E Green, Martin Kircher, Johannes Krause, Nick Patterson, Eric Y Durand, Bence Viola, Adrian W Briggs, Udo Stenzel, Philip L F Johnson

Nature· December 2010

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A draft sequence of the Neandertal genome.
Richard E Green, Johannes Krause, Adrian W Briggs, Tomislav Maricic, Udo Stenzel, Martin Kircher, Nick Patterson, Heng Li, Weiwei Zhai, Markus Hsi-Yang Fritz

Science· May 2010

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The repertoire and structure of adhesion GPCR transcript variants assembled from publicly available deep-sequenced human samples.
Christina Katharina Kuhn, Udo Stenzel, Sandra Berndt, Ines Liebscher, Torsten Schöneberg

Nucleic Acids Res· April 2024

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deML: robust demultiplexing of Illumina sequences using a likelihood-based approach.
Gabriel Renaud, Udo Stenzel, Tomislav Maricic, Victor Wiebe, Janet Kelso

Bioinformatics· March 2015

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leeHom: adaptor trimming and merging for Illumina sequencing reads.
Gabriel Renaud, Udo Stenzel, Janet Kelso

Nucleic Acids Res· October 2014

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Patterns of coding variation in the complete exomes of three Neandertals.
Sergi Castellano, Genís Parra, Federico A Sánchez-Quinto, Fernando Racimo, Martin Kuhlwilm, Udo Stenzel

Proc Natl Acad Sci U S A· May 2014

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freeIbis: an efficient basecaller with calibrated quality scores for Illumina sequencers.
Gabriel Renaud, Martin Kircher, Udo Stenzel, Janet Kelso

Bioinformatics· May 2013

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DNA analysis of an early modern human from Tianyuan Cave, China.
Qiaomei Fu, Matthias Meyer, Xing Gao, Udo Stenzel, Hernán A Burbano

Proc Natl Acad Sci U S A· February 2013

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Computational challenges in the analysis of ancient DNA.
Kay Prüfer, Udo Stenzel, Michael Hofreiter, Svante Pääbo, Janet Kelso

Genome Biol· September 2010

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Road blocks on paleogenomes--polymerase extension profiling reveals the frequency of blocking lesions in ancient DNA.
Patricia Heyn, Udo Stenzel, Adrian W Briggs, Martin Kircher, Michael Hofreiter

Nucleic Acids Res· September 2010

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Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA.
Adrian W Briggs, Udo Stenzel, Matthias Meyer, Johannes Krause, Martin Kircher

Nucleic Acids Res· April 2010

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Direct multiplex sequencing (DMPS)--a novel method for targeted high-throughput sequencing of ancient and highly degraded DNA.
Mathias Stiller, Michael Knapp, Udo Stenzel, Michael Hofreiter, Matthias Meyer

Genome Res· October 2009

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Improved base calling for the Illumina Genome Analyzer using machine learning strategies.
Martin Kircher, Udo Stenzel, Janet Kelso

Genome Biol· October 2009

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Primer extension capture: targeted sequence retrieval from heavily degraded DNA sources.
Adrian W Briggs, Jeffrey M Good, Richard E Green, Johannes Krause, Tomislav Maricic, Udo Stenzel

J Vis Exp· September 2009

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Targeted retrieval and analysis of five Neandertal mtDNA genomes.
Adrian W Briggs, Jeffrey M Good, Richard E Green, Johannes Krause, Tomislav Maricic, Udo Stenzel

Science· July 2009

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Parallel tagged sequencing on the 454 platform.
Matthias Meyer, Udo Stenzel, Michael Hofreiter

Nat Protoc· November 2008

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A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing.
Richard E Green, Anna-Sapfo Malaspinas, Johannes Krause, Adrian W Briggs, Philip L F Johnson, Udo Stenzel

Cell· August 2008

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PatMaN: rapid alignment of short sequences to large databases.
Kay Prüfer, Udo Stenzel, Michael Dannemann, Richard E Green, Michael Lachmann

Bioinformatics· July 2008

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Targeted high-throughput sequencing of tagged nucleic acid samples.
Matthias Meyer, Udo Stenzel, Sean Myles, Kay Prüfer, Michael Hofreiter

Nucleic Acids Res· October 2007

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Patterns of damage in genomic DNA sequences from a Neandertal.
Adrian W Briggs, Udo Stenzel, Philip L F Johnson, Richard E Green, Janet Kelso

Proc Natl Acad Sci U S A· September 2007

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