Publications by authors named "Ward Wheeler"

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The limits of phylogenetic analysis: identifying analytical hallucinations.
Ward C Wheeler

Cladistics· October 2025

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The phylogenetic relationships of Bokermann´s treefrogs: species groups, reproductive biology, and biogeography (Anura: Hylidae: Bokermannohyla).
Julian Faivovich, Ana Carolina C Lourenço, Paulo D P Pinheiro, Mariana L Lyra, Délio Baêta, Ward C Wheeler

Cladistics· August 2025

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Phylogenetic minimum description length: an optimality criterion based on algorithmic complexity.
Ward C Wheeler, Andres Varón

Cladistics· April 2025

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Multi-armed bandits, Thomson sampling and unsupervised machine learning in phylogenetic graph search.
Ward C Wheeler

Cladistics· August 2024

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PhylogeneticGraph (PhyG) a new phylogenetic graph search and optimization program.
Ward C Wheeler, Alexander Washburn, Louise M Crowley

Cladistics· February 2024

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Parsimony optimization of phylogenetic networks.
Ward C Wheeler, Alexander J Washburn

Cladistics· October 2023

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Much ado about nothing: inapplicable data as insertion-deletion events.
Ward C Wheeler

Cladistics· October 2023

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Evidence for reduced BRCA2 functional activity in Homo sapiens after divergence from the chimpanzee-human last common ancestor.
Jinlong Huang, Yi Zhong, Alvin P Makohon-Moore, Travis White, Maria Jasin, Ward C Wheeler

Cell Rep· May 2022

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Phylogenetic supergraphs.
Ward C Wheeler

Cladistics· February 2022

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Comprehensive Species Sampling and Sophisticated Algorithmic Approaches Refute the Monophyly of Arachnida.
Jesús A Ballesteros, Carlos E Santibáñez-López, Caitlin M Baker, Ligia R Benavides, Tauana J Cunha, Ward C Wheeler

Mol Biol Evol· February 2022

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Distance Wagner tree refinement as a heuristic approach to character-based initial tree construction.
Ward C Wheeler

Cladistics· December 2021

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Phylogenetic relationships of the Boana pulchella Group (Anura: Hylidae).
Julian Faivovich, Paulo D P Pinheiro, Mariana L Lyra, Martín O Pereyra, Diego Baldo, Ward C Wheeler

Mol Phylogenet Evol· February 2021

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The phylogeny of Dendropsophini (Anura: Hylidae: Hylinae).
Victor G D Orrico, Taran Grant, Julian Faivovich, Mauricio Rivera-Correa, Marco A Rada, Ward C Wheeler

Cladistics· February 2021

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Phylogenomic Resolution of Sea Spider Diversification through Integration of Multiple Data Classes.
Jesús A Ballesteros, Emily V W Setton, Carlos E Santibáñez-López, Claudia P Arango, Georg Brenneis, Ward C Wheeler

Mol Biol Evol· January 2021

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Efficient implied alignment.
Alex J Washburn, Ward C Wheeler

BMC Bioinformatics· July 2020

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Statistical Modeling of Distribution Patterns: A Markov Random Field Implementation and Its Application on Areas of Endemism.
Nelson R Salinas, Ward C Wheeler

Syst Biol· January 2020

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Comparing and displaying phylogenetic trees using edge union networks.
Miriam Miyagi, Ward C Wheeler

Cladistics· December 2019

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FASTC: a file format for multi-character sequence data.
Ward C Wheeler, Alexander J Washburn

Cladistics· October 2019

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Revising the Bantu tree.
Peter M Whiteley, Ming Xue, Ward C Wheeler

Cladistics· June 2019

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Revisiting habitat and lifestyle transitions in Heteroptera (Insecta: Hemiptera): insights from a combined morphological and molecular phylogeny.
Christiane Weirauch, Randall T Schuh, Gerasimos Cassis, Ward C Wheeler

Cladistics· February 2019

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There is no evidence that Podoctidae carry eggs of their own species: Reply to Machado and Wolff (2017).
Prashant P Sharma, Jill T Oberski, Marc A Santiago, Ricardo Kriebel, Savana M Lipps, Ward C Wheeler

Mol Phylogenet Evol· December 2018

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Taxon cycle predictions supported by model-based inference in Indo-Pacific trap-jaw ants (Hymenoptera: Formicidae: Odontomachus).
Pável Matos-Maraví, Nicholas J Matzke, Fredrick J Larabee, Ronald M Clouse, Ward C Wheeler

Mol Ecol· October 2018

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The spider tree of life: phylogeny of Araneae based on target-gene analyses from an extensive taxon sampling.
Ward C Wheeler, Jonathan A Coddington, Louise M Crowley, Dimitar Dimitrov, Pablo A Goloboff

Cladistics· December 2017

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Expression and function of spineless orthologs correlate with distal deutocerebral appendage morphology across Arthropoda.
Emily V W Setton, Logan E March, Erik D Nolan, Tamsin E Jones, Holly Cho, Ward C Wheeler

Dev Biol· October 2017

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Nomenclatural stability does not justify recognition of paraphyletic taxa: A response to Scherz et al. (2016).
Pedro L V Peloso, Christopher J Raxworthy, Ward C Wheeler, Darrel R Frost

Mol Phylogenet Evol· June 2017

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