Publications by authors named "Ying Sims"

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Genomics of cold adaptations in the Antarctic notothenioid fish radiation.
Iliana Bista, Jonathan M D Wood, Thomas Desvignes, Shane A McCarthy, Michael Matschiner, Zemin Ning, Alan Tracey, James Torrance, Ying Sims, William Chow

Nat Commun· June 2023

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Persistent Genomic Erosion in Whooping Cranes Despite Demographic Recovery.
Claudia Fontsere, Samuel A Speak, Andrew J Caven, Juan Antonio Rodríguez, Xuejing Wang, Ying Sims

Mol Ecol· December 2025

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A chromosomal reference genome sequence for the malaria mosquito, , Theobald, 1904.
Sandrine Eveline Nsango, Diego Ayala, Jean-Pierre Agbor, Harriet F Johnson, Haynes Heaton, Ying Sims

Wellcome Open Res· October 2025

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Forty new genomes shed light on sexual reproduction and the origin of tetraploidy in Microsporidia.
Amjad Khalaf, Chenxi Zhou, Claudia C Weber, Emmelien Vancaester, Ying Sims

PLoS Biol· October 2025

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Genomic and genetic insights into speciation and pigment pattern diversification in fishes.
Jianguo Lu, Marco Podobnik, Junrou Huang, Braedan M McCluskey, Shane A McCarthy, Ying Sims

bioRxiv· October 2025

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Chromosome-level reference genome assembly of the gyrfalcon (Falco rusticolus) and population genomics offer insights into the falcon population in Mongolia.
Farooq Omar Al-Ajli, Giulio Formenti, Olivier Fedrigo, Alan Tracey, Ying Sims

Sci Rep· February 2025

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A Complete Assembly and Annotation of the American Shad Genome Yields Insights into the Origins of Diadromy.
Jonathan P Velotta, Azwad R Iqbal, Emma S Glenn, Ryan P Franckowiak, Giulio Formenti, Ying Sims

Genome Biol Evol· January 2025

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The Sensory Shark: High-quality Morphological, Genomic and Transcriptomic Data for the Small-spotted Catshark Scyliorhinus Canicula Reveal the Molecular Bases of Sensory Organ Evolution in Jawed Vertebrates.
Hélène Mayeur, Jake Leyhr, John Mulley, Nicolas Leurs, Léo Michel, Ying Sims

Mol Biol Evol· December 2024

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Genomic changes and stabilization following homoploid hybrid speciation of the Oxford ragwort Senecio squalidus.
Bruno Nevado, Mark A Chapman, Adrian C Brennan, James W Clark, Edgar L Y Wong, Ying Sims

Curr Biol· October 2024

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A reference genome for the Harpy Eagle reveals steady demographic decline and chromosomal rearrangements in the origin of Accipitriformes.
Lucas Eduardo Costa Canesin, Sibelle T Vilaça, Renato R M Oliveira, Farooq Al-Ajli, Alan Tracey, Ying Sims

Sci Rep· September 2024

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Chromosomal reference genome sequences for the malaria mosquito, , Laveran, 1900.
Lemonde B A Bouafou, Diego Ayala, Boris K Makanga, Nil Rahola, Harriet F Johnson, Ying Sims

Wellcome Open Res· September 2024

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A chromosomal reference genome sequence for the malaria mosquito, , Theobald, 1903.
Boris K Makanga, Diego Ayala, Nil Rahola, Lemonde B A Bouafou, Harriet F Johnson, Ying Sims

Wellcome Open Res· September 2024

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A chromosomal reference genome sequence for the malaria mosquito, , Giles, 1902.
Nil Rahola, Diego Ayala, Lemonde B A Bouafou, Boris K Makanga, Harriet F Johnson, Ying Sims

Wellcome Open Res· September 2024

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A reference genome for the Andean cavefish Trichomycterus rosablanca (Siluriformes, Trichomycteridae): Building genomic resources to study evolution in cave environments.
Carlos Daniel Cadena, Laura Pabón, Carlos DoNascimiento, Linelle Abueg, Tatiana Tilley, Ying Sims

J Hered· May 2024

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Chromosome-scale Genome Assembly of the Rough Periwinkle Littorina saxatilis.
Aurélien De Jode, Rui Faria, Giulio Formenti, Ying Sims, Timothy P Smith

Genome Biol Evol· April 2024

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Evolution and genetic architecture of sex-limited polymorphism in cuckoos.
Justin Merondun, Cristiana I Marques, Pedro Andrade, Swetlana Meshcheryagina, Ismael Galván, Ying Sims

Sci Adv· April 2024

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A chromosomal reference genome sequence for the malaria mosquito, , Giles, 1902, Ifakara strain.
Tibebu Habtewold, Martin Wagah, Mgeni Mohamed Tambwe, Sarah Moore, Nikolai Windbichler, Ying Sims

Wellcome Open Res· March 2024

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A chromosome-level genome assembly for the dugong (Dugong dugon).
Dorothy Nevé Baker, Linelle Abueg, Merly Escalona, Katherine A Farquharson, Janet M Lanyon, Ying Sims

J Hered· March 2024

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Chromosome level genome assembly of the Etruscan shrew Suncus etruscus.
Yury V Bukhman, Susanne Meyer, Li-Fang Chu, Linelle Abueg, Jessica Antosiewicz-Bourget, Ying Sims

Sci Data· February 2024

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A chromosomal reference genome sequence for the malaria mosquito, , Evans, 1925.
Sandrine N Nsango, Jean-Pierre Agbor, Diego Ayala, Harriet F Johnson, Haynes Heaton, Ying Sims

Wellcome Open Res· November 2023

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Prioritizing Endangered Species in Genome Sequencing: Conservation Genomics in Action with the First Platinum-Standard Reference-Quality Genome of the Critically Endangered European Mink L., 1761.
Jakub Skorupski, Florian Brandes, Christian Seebass, Wolfgang Festl, Przemysław Śmietana, Ying Sims

Int J Mol Sci· October 2023

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A Chromosome-Level Reference Genome for the Black-Legged Kittiwake (Rissa tridactyla), a Declining Circumpolar Seabird.
Marcella Sozzoni, Joan Ferrer Obiol, Giulio Formenti, Anna Tigano, Josephine R Paris, Ying Sims

Genome Biol Evol· August 2023

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Caecilian Genomes Reveal the Molecular Basis of Adaptation and Convergent Evolution of Limblessness in Snakes and Caecilians.
Vladimir Ovchinnikov, Marcela Uliano-Silva, Mark Wilkinson, Jonathan Wood, Michelle Smith, Ying Sims

Mol Biol Evol· May 2023

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An improved germline genome assembly for the sea lamprey Petromyzon marinus illuminates the evolution of germline-specific chromosomes.
Nataliya Timoshevskaya, Kaan I Eşkut, Vladimir A Timoshevskiy, Sofia M C Robb, Carson Holt, Ying Sims

Cell Rep· March 2023

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The genome sequence of the malaria mosquito, , Giles, 1900.
Diego Ayala, Ousman Akone-Ella, Pierre Kengne, Harriet Johnson, Haynes Heaton, Ying Sims

Wellcome Open Res· March 2023

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