Publications by authors named "YingZe Wang"

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Assessing adult zebrafish despair-like behaviors in the small vertical cylinder immobility test (VCIT).
Jiyi Wang, Vea Bley, Jiayou Jiang, Yunqian Zhang, Yixing Qin, Chaoming Wang, Gan Wang, Yingze Wang

J Neurosci Methods· December 2025

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Numerical study on thermo-mechanical interaction in skin tissue with temperature-dependent properties under sequential cold and heat stimulation.
Yingze Wang, Zhaowei He, Sheng Zhang, Xiao Li Dai

J Therm Biol· December 2025

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Trojan Horse Effect of Biologically Aged Microplastics-An Intracellular Carrier of LPS for Licensing Noncanonical Inflammasome Activation.
Qi Li, Xiaofeng Wang, Yaqing Xu, Wuqiong Zhang, Yingnan Liu, Yingze Wang

Environ Sci Technol· December 2025

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SynLlama: Generating Synthesizable Molecules and Their Analogs with Large Language Models.
Kunyang Sun, Dorian Bagni, Joseph M Cavanagh, Yingze Wang, Jacob M Sawyer

ArXiv· November 2025

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Protein β-O-glucosylation by Legionella LtpM through short consensus sequons G-T/S and S-G.
Wei Li, Ling Gao, Shiyong Cui, Tiantian Wei, Jiayu Sun, Yingze Wang, Chunting Wang

Nat Chem Biol· November 2025

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dpdata: A Scalable Python Toolkit for Atomistic Machine Learning Data Sets.
Jinzhe Zeng, Xingliang Peng, Yong-Bin Zhuang, Haidi Wang, Fengbo Yuan, Yingze Wang, Junjie Wang, Han Wang

J Chem Inf Model· November 2025

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Polaris Challenge: Data-Driven Priors to Improve Docking for Pose Prediction.
Kunyang Sun, Yingze Wang, Justin Purnomo, Teresa Head-Gordon

J Chem Inf Model· November 2025

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Improved Treatment of 1-4 Interactions in Force Fields for Molecular Dynamics Simulations.
Aalim S Abdullah, Yingze Wang, Maximilian F S J Menger, Selim Sami, Teresa Head-Gordon

J Chem Theory Comput· November 2025

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SynLlama: Generating Synthesizable Molecules and Their Analogs with Large Language Models.
Kunyang Sun, Dorian Bagni, Joseph M Cavanagh, Yingze Wang, Jacob M Sawyer

ACS Cent Sci· November 2025

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Thermal analysis of biological tissue under pulsed laser irradiation accounting for temperature-dependent properties.
Yingze Wang, Zhaowei He, Sheng Zhang, Shuang Zeng

J Therm Biol· October 2025

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Downregulation of Tra2α and Tra2β suppresses lipopolysaccharide-induced inflammation in macrophages by regulating MyD88 mRNA alternative splicing.
Yu Fu, Luyao Zhang, Yanjing Wang, Bo Cheng, Weiye Shi, Yingze Wang

Mol Cell Biochem· September 2025

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Neurodegenerative diseases: Epigenetic regulatory mechanisms and therapeutic potential.
Jianbing Men, Xinyue Wang, Yunnuo Zhou, Yumeng Huang, Yue Zheng, Yingze Wang

Cell Signal· July 2025

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A workflow to create a high-quality protein-ligand binding dataset for training, validation, and prediction tasks.
Yingze Wang, Kunyang Sun, Jie Li, Xingyi Guan, Oufan Zhang

Digit Discov· May 2025

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Modeling heat transfer in biological tissues with temperature-dependent properties under the moving heat source effects.
Yingze Wang, Zhaowei He, Sheng Zhang, Zhe Wang, Wenbo Zheng

J Therm Biol· April 2025

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A Workflow to Create a High-Quality Protein-Ligand Binding Dataset for Training, Validation, and Prediction Tasks.
Yingze Wang, Kunyang Sun, Jie Li, Xingyi Guan, Oufan Zhang

ArXiv· March 2025

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Mining for Potent Inhibitors through Artificial Intelligence and Physics: A Unified Methodology for Ligand Based and Structure Based Drug Design.
Jie Li, Oufan Zhang, Kunyang Sun, Yingze Wang, Xingyi Guan

J Chem Inf Model· December 2024

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Interaction of phosphorus and GA improved oilseed flax grain yield and phosphorus-utilization efficiency.
Yingze Wang, Zhi Cao, Yuhong Gao, Bing Wu, Junyi Niu, Yifan Wang, Haidi Wang

Front Plant Sci· August 2024

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SRSF3 Knockdown Inhibits Lipopolysaccharide-Induced Inflammatory Response in Macrophages.
Yu Fu, Yanjing Wang, Luyao Zhang, Tianliu He, Weiye Shi, Yingze Wang

Curr Issues Mol Biol· June 2024

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Leak Proof PDBBind: A Reorganized Dataset of Protein-Ligand Complexes for More Generalizable Binding Affinity Prediction.
Jie Li, Xingyi Guan, Oufan Zhang, Kunyang Sun, Yingze Wang

ArXiv· May 2024

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Serine/Arginine-Rich Splicing Factor 7 Knockdown Inhibits Aerobic Glycolysis and Growth in HepG2 Cells by Regulating PKM2 Expression.
Weiye Shi, Xu Yao, Xueyu Cao, Yu Fu, Yingze Wang

Curr Issues Mol Biol· May 2024

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Molecular Contrastive Pretraining with Collaborative Featurizations.
Yanqiao Zhu, Dingshuo Chen, Yuanqi Du, Yingze Wang, Qiang Liu

J Chem Inf Model· February 2024

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Research Progress of Nanomaterials Acting on NK Cells in Tumor Immunotherapy and Imaging.
Yachan Feng, Haojie Zhang, Jiangtao Shao, Chao Du, Xiaolei Zhou, Yingze Wang

Biology (Basel)· February 2024

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Coupled thermo-mechanical interaction on a multi-layered skin tissue with temperature-dependent physical properties irradiated by a pulse laser.
Yingze Wang, Zhe Wang, Wenbo Zheng, Xiaoyu Lu

J Therm Biol· January 2024

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DMFF: An Open-Source Automatic Differentiable Platform for Molecular Force Field Development and Molecular Dynamics Simulation.
Xinyan Wang, Jichen Li, Lan Yang, Feiyang Chen, Yingze Wang

J Chem Theory Comput· September 2023

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DeePMD-kit v2: A software package for deep potential models.
Jinzhe Zeng, Duo Zhang, Denghui Lu, Pinghui Mo, Zeyu Li, Yingze Wang, Yibo Wang, Bo Wang, Han Wang

J Chem Phys· August 2023

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