Mol Ecol Resour January 2022 PMID 34288531

SPART: A versatile and standardized data exchange format for species partition information.

Aurélien Miralles, Jacques Ducasse, Sophie Brouillet, Tomas Flouri, Tomochika Fujisawa, Paschalia Kapli, L Lacey Knowles, Sangeeta Kumari, Alexandros Stamatakis, Jeet Sukumaran, Sarah Lutteropp, Miguel Vences, Nicolas Puillandre

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Mentions

Peak: 5 in Mar 2021

across 2 sources since Mar 2021

Extended reach

175,478

potential audience

Total likes

106

Video views

5,948

Mentions per month

Mar 2021 – Jan 2024

Where it's discussed

X / Twitter7 posts
YouTube3 videos

AI synopsis

What people are saying

The discussions highlight general enthusiasm for the new data exchange format like 'versatile' and 'standardized,' with mentions of its utility in exporting, importing, and comparing species data. The tone is mostly optimistic, emphasizing the format's potential to streamline processes, as seen in phrases like 'improve compatibility' and 'enables visualization,' which reflect a recognition of its practical impact.

AgreementModerate agreement

Most discussions express support for SPART’s potential to improve species delimitation methods.

InterestHigh interest

There is high curiosity and enthusiasm about the standardization benefits, indicated by hashtags and positive phrases.

EngagementModerate engagement

The posts show moderate engagement, with some references to specific tools and the significance of the format, but lack detailed critiques.

ImpactModerate impact

Participants believe SPART could positively influence biodiversity research and species classification practices, though direct impacts are mostly implied.

Abstract in brief

A variety of data types and computer tools exist for species delimitation (SD), but these methods are not commonly used by alpha-taxonomists due to challenges like lack of compatibility among different SD programs.
Researchers often face time-consuming processes when comparing species partitions from different SD approaches due to their varying results and the absence of a standard format.
The proposed standardized format, SPART, aims to improve compatibility among SD tools by reporting partitions and individual assignments, with options for including support values and original analysis details, while providing two user-friendly versions: matricial SPART and SPART.XML.

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All mentions

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TAXON-OMICS · Jan 25, 2024 3,354 views

Efficient Species Partitioning Using iTaxoTools and ASAP Algorithm

This tutorial introduces iTaxoTools' version of ASAP, a method for constructing species partitions from single locus sequence alignments. ASAP rapidly splits large datasets into putative species using a hierarchical…

TAXON-OMICS · Jan 25, 2024 2,043 views

Limes 2.0: Automated Comparison of Species Delimitation Methods

Species delimitation is rapidly advancing in systematics. LIMES automates the qualitative comparison of species partitions from different approaches, regardless of their theoretical background, aiding researchers in…

TAXON-OMICS · Jan 25, 2024 551 views

UCL Discovery

@ucl_discovery · X

Open Access UCL Research: SPART: A versatile and standardized data exchange format for species partition information https://t.co/QgcdnP14L8

Mar 24, 2023 · 2,522 followers View post →

Molecular Ecology

@molecology · X

Aug 11, 2021 · 25 likes · 2 shares · 7,293 followers View post →

Helio Rocha

@_elioRocha · X

#bioRxiv SPART, a versatile and standardized data exchange format for species partition information #bioinfo https://t.co/aIfMmNeV4G

Mar 23, 2021 · 609 followers View post →

Oleksandr Zinenko

@Oleks_Zinenko · X

SPART, a versatile and standardized data exchange format for species partition information https://t.co/HLee8h9Uek

Mar 22, 2021 · 68 followers View post →

Bree

@BreeKB_ · X

RT @biorxiv_bioinfo: SPART, a versatile and standardized data exchange format for species partition information https://t.co/NvECdBbR4d #b…

Mar 22, 2021 · 1 share · 3,683 followers View post →

bioRxiv Bioinfo

@biorxiv_bioinfo · X

SPART, a versatile and standardized data exchange format for species partition information https://t.co/NvECdBbR4d #biorxiv_bioinfo

Mar 22, 2021 · 1 share · 18,132 followers View post →

bioRxiv

@biorxivpreprint · X

SPART, a versatile and standardized data exchange format for species partition information https://t.co/E1HHrfXJbG #bioRxiv

Mar 22, 2021 · 137,216 followers View post →