December 2021 PMID 34862501

Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model.

Mathias Hammer, Maximiliaan Huisman, Alessandro Rigano, Ulrike Boehm, James J Chambers, Nathalie Gaudreault, Alison J North, Jaime A Pimentel, Damir Sudar, Peter Bajcsy, Claire M Brown, Alexander D Corbett, Orestis Faklaris, Judith Lacoste, Alex Laude

Mentions

21
Peak: 13 in Apr 2021
across 3 sources since Apr 2021

Extended reach

178,529
potential audience

Total likes

27

Video views

384

Mentions per month

Apr 2021 – May 2022

Where it's discussed

  • X / Twitter15 posts
  • Blogs4 articles
  • YouTube2 videos

AI synopsis

What people are saying

The collective discussions express strong support and enthusiasm for the article, with phrases like 'Our @bioImaging_NCL is involved' and 'New paper alert!', highlighting engagement and community interest. The tone underscores the perceived importance of standardizing metadata, portraying it as a crucial step forward for reproducibility and data quality in light microscopy.

AgreementModerate agreement

Most discussions show support for the importance of developing standardized metadata, reflecting positive consensus about the publication’s relevance.

InterestHigh interest

Posts demonstrate high interest through mentions of collaborations, new paper alerts, and enthusiasm about extending data models, indicating active engagement with the topic.

EngagementModerate engagement

The discussions include references to specific initiatives, co-authors, linked organizations, and online alerts, showing a moderate level of deep engagement.

ImpactHigh impact

The emphasis on collaborations, standards, and community-driven efforts suggests the publication is perceived as having a significant and far-reaching influence on microscopy practices.

Abstract in brief

  • The text discusses the need for standardized metadata in light microscopy to improve the quality, reproducibility, and value of imaging data.
  • It highlights efforts by the 4DN Initiative and BINA to develop extended light microscopy metadata specifications that build on the existing OME model, tailored to different experimental levels.
  • These new specifications aim to help scientists create more detailed and comprehensive records of their imaging experiments, supporting community-driven standards.]

Top posts

Most liked on X and Bluesky
Caterina Strambio De Castillia
@StrambioLab · X

@4DNucleome teamed up with @BioimagingNA to extend the @openmicroscopy data model and move a step forward --> Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model https://t.co/WCOCURBO5T

Apr 26, 2021 · 9 likes · 3 shares · 737 followers View post →
Caterina Strambio De Castillia
@StrambioLab · X

Reporting and Reproducibility in Microscopy

Dec 3, 2021 · 4 likes · 737 followers View post →
UMass Institute for Applied Life Sciences
@UMassIALS · X

New paper alert! “Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model” co-authored by James Chambers, IALS Light Microscopy Facility Director, is available here: https://t.co/TpUWh5JM2Q @UMassLMF #UMassCoreFacilities https://t.co/ae0d1yoT0n

Apr 28, 2021 · 3 likes · 887 followers View post →
Jeremy Luban
@LubanLab · X

#OpusMaximusMicroscopicus from @StrambioLab @ProgMolMed @UMassMedical @cziscience Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model https://t.co/c27PNBMWwW

Apr 27, 2021 · 2 likes · 3,811 followers View post →
MFM_Microscopy
@RTMFM1 · X

Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model https://t.co/ccTNDTCKbF

Apr 29, 2021 · 2 likes · 1 share · 849 followers View post →
bioRxiv Bioinfo
@biorxiv_bioinfo · X

Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model https://t.co/km2c26DInT #biorxiv_bioinfo

Apr 26, 2021 · 1 like · 18,185 followers View post →

All mentions

Bio-Imaging Unit-Newcastle University
@bioImaging_NCL · X

"Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model" Our @bioImaging_NCL is involved in to ensure the quality, reproducibility and value of imaging data. Read more here: https://t.co/ZQMgX5GvFL

Dec 6, 2021 · 336 followers View post →
Caterina Strambio De Castillia
@StrambioLab · X

Reporting and Reproducibility in Microscopy

Dec 3, 2021 · 4 likes · 737 followers View post →
Volodymyr Nechyporuk-Zloy
@vnzloy · X

"Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model Mathias Hammer et al. bioRxiv. posted 26 April 2021, 10.1101/2021.04.25.441198 https://t.co/xgmayBwqLp https://t.co/adlXQClkcE

Apr 30, 2021 · 1 like · 1,280 followers View post →
Lamar Soutter Library at UMass Chan Medical School
@UMassChanLib · X

RT @StrambioLab: @4DNucleome teamed up with @BioimagingNA to extend the @openmicroscopy data model and move a step forward --> Towards comm…

Apr 29, 2021 · 3 shares · 1,483 followers View post →
BioloGeek
@Nico_BioloGeek · X

RT @RTMFM1: Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model https://t.co/cc…

Apr 29, 2021 · 1 share · 1,731 followers View post →
MFM_Microscopy
@RTMFM1 · X

Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model https://t.co/ccTNDTCKbF

Apr 29, 2021 · 2 likes · 1 share · 849 followers View post →
UMass Institute for Applied Life Sciences
@UMassIALS · X

New paper alert! “Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model” co-authored by James Chambers, IALS Light Microscopy Facility Director, is available here: https://t.co/TpUWh5JM2Q @UMassLMF #UMassCoreFacilities https://t.co/ae0d1yoT0n

Apr 28, 2021 · 3 likes · 887 followers View post →
4DNucleome
@4DNucleome · X

RT @StrambioLab: @4DNucleome teamed up with @BioimagingNA to extend the @openmicroscopy data model and move a step forward --> Towards comm…

Apr 27, 2021 · 3 shares · 4,470 followers View post →
Jeremy Luban
@LubanLab · X

#OpusMaximusMicroscopicus from @StrambioLab @ProgMolMed @UMassMedical @cziscience Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model https://t.co/c27PNBMWwW

Apr 27, 2021 · 2 likes · 3,811 followers View post →
4DNucleome
@4DNucleome · X

Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model https://t.co/IBcgZuYDVz

Apr 27, 2021 · 4,470 followers View post →
Helio Rocha
@_elioRocha · X

#bioRxiv Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model #bioinfo https://t.co/kRHFN7q7SB

Apr 27, 2021 · 609 followers View post →
Roger J Davis
@RogerJDavis1 · X

RT @StrambioLab: @4DNucleome teamed up with @BioimagingNA to extend the @openmicroscopy data model and move a step forward --> Towards comm…

Apr 26, 2021 · 3 shares · 1,123 followers View post →
Caterina Strambio De Castillia
@StrambioLab · X

@4DNucleome teamed up with @BioimagingNA to extend the @openmicroscopy data model and move a step forward --> Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model https://t.co/WCOCURBO5T

Apr 26, 2021 · 9 likes · 3 shares · 737 followers View post →
bioRxiv Bioinfo
@biorxiv_bioinfo · X

Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model https://t.co/km2c26DInT #biorxiv_bioinfo

Apr 26, 2021 · 1 like · 18,185 followers View post →
bioRxiv
@biorxivpreprint · X

Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model https://t.co/W6IKjKKLxU #bioRxiv

Apr 26, 2021 · 137,410 followers View post →