Publications by authors named "Gene Yu"

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Guidance for sharing computational models of neural stimulation: from project planning to publication.
Nicole A Pelot, Boshuo Wang, Daniel P Marshall, Minhaj A Hussain, Eric D Musselman, Gene J Yu

J Neural Eng· March 2025

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Circuits and mechanisms for TMS-induced corticospinal waves: Connecting sensitivity analysis to the network graph.
Gene J Yu, Federico Ranieri, Vincenzo Di Lazzaro, Marc A Sommer, Angel V Peterchev

PLoS Comput Biol· December 2024

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Bridging Hierarchies in Multi-Scale Models of Neural Systems: Look-Up Tables Enable Computationally Efficient Simulations of Non-linear Synaptic Dynamics.
Duy-Tan J Pham, Gene J Yu, Jean-Marie C Bouteiller, Theodore W Berger

Front Comput Neurosci· October 2021

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Topographic Organization of Correlation Along the Longitudinal and Transverse Axes in Rat Hippocampal CA3 Due to Excitatory Afferents.
Gene J Yu, Jean-Marie C Bouteiller, Theodore W Berger

Front Comput Neurosci· November 2020

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A Computational Model of the Cholinergic Modulation of CA1 Pyramidal Cell Activity.
Adam Mergenthal, Jean-Marie C Bouteiller, Gene J Yu, Theodore W Berger

Front Comput Neurosci· September 2020

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Generation of Granule Cell Dendritic Morphologies by Estimating the Spatial Heterogeneity of Dendritic Branching.
Zane Z Chou, Gene J Yu, Theodore W Berger

Front Comput Neurosci· April 2020

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Axonal Anatomy Optimizes Spatial Encoding in the Rat Entorhinal-Dentate System: A Computational Study.
Gene J Yu, Jean-Marie C Bouteiller, Dong Song, Theodore W Berger

IEEE Trans Biomed Eng· October 2019

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Network Activity Due to Topographic Organization of Schaffer Collaterals in a Large-Scale Model of Rat CA1.
Gene J Yu, Zhicheng Feng, Theodore W Berger

Annu Int Conf IEEE Eng Med Biol Soc· July 2019

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Model-Based Analysis of Electrode Placement and Pulse Amplitude for Hippocampal Stimulation.
Clayton S Bingham, Kyle Loizos, Gene J Yu, Andrew Gilbert, Jean-Marie C Bouteiller

IEEE Trans Biomed Eng· October 2018

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Point Process Filtering Estimates of Branching Rate for Neural Dendritic Morphology Generation.
Zane Z Chou, Gene J Yu, Theodore W Berger

Annu Int Conf IEEE Eng Med Biol Soc· July 2018

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Modeling Nonlinear Synaptic Dynamics: A Laguerre-Volterra Network Framework for Improved Computational Efficiency in Large Scale Simulations.
Eric Y Hu, Gene Yu, Dong Song, C Jean-Marie Bouteiller, W Theodore Berger

Annu Int Conf IEEE Eng Med Biol Soc· July 2018

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Decoding Position to Analyze Spatial Information Encoding in a Large-Scale Neuronal Network Model of Rat Dentate Gyrus.
Gene J Yu, Jean-Marie C Bouteiller, Dong Song, Theodore W Berger

Annu Int Conf IEEE Eng Med Biol Soc· July 2018

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Topography-dependent spatio-temporal correlations in the entorhinal-dentate-CA3 circuit in a large-scale computational model of the Rat Hippocampus.
Gene J Yu, Phillip J Hendrickson, Dong Song, Theodore W Berger

Annu Int Conf IEEE Eng Med Biol Soc· September 2016

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A million-plus neuron model of the hippocampal dentate gyrus: Dependency of spatio-temporal network dynamics on topography.
Phillip J Hendrickson, Gene J Yu, Dong Song, Theodore W Berger

Annu Int Conf IEEE Eng Med Biol Soc· September 2016

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Place field detection using grid-based clustering in a large-scale computational model of the rat dentate gyrus.
Gene J Yu, Dong Song, Theodore W Berger

Annu Int Conf IEEE Eng Med Biol Soc· August 2016

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A large-scale detailed neuronal model of electrical stimulation of the dentate gyrus and perforant path as a platform for electrode design and optimization.
Clayton S Bingham, Kyle Loizos, Gene Yu, Andrew Gilbert, Jean-Marie Bouteiller

Annu Int Conf IEEE Eng Med Biol Soc· August 2016

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A Million-Plus Neuron Model of the Hippocampal Dentate Gyrus: Critical Role for Topography in Determining Spatiotemporal Network Dynamics.
Phillip J Hendrickson, Gene J Yu, Dong Song, Theodore W Berger

IEEE Trans Biomed Eng· January 2016

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Interactions between Inhibitory Interneurons and Excitatory Associational Circuitry in Determining Spatio-Temporal Dynamics of Hippocampal Dentate Granule Cells: A Large-Scale Computational Study.
Phillip J Hendrickson, Gene J Yu, Dong Song, Theodore W Berger

Front Syst Neurosci· December 2015

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Implementation of the excitatory entorhinal-dentate-CA3 topography in a large-scale computational model of the rat hippocampus.
Gene Yu, Dong Song, Theodore W Berger

Annu Int Conf IEEE Eng Med Biol Soc· October 2015

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The role of topography in the transformation of spatiotemporal patterns by a large-scale, biologically realistic model of the rat dentate gyrus.
Gene J Yu, Phillip J Hendrickson, Brian S Robinson, Dong Song, Theodore W Berger

Annu Int Conf IEEE Eng Med Biol Soc· August 2015

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The contribution of relative activation levels between populations of cells to network activity in a large-scale biologically realistic model of the hippocampus.
Phillip J Hendrickson, Gene J Yu, Brian S Robinson, Dong Song, Theodore W Berger

Annu Int Conf IEEE Eng Med Biol Soc· August 2015

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Implementation of topographically constrained connectivity for a large-scale biologically realistic model of the hippocampus.
Gene J Yu, Brian S Robinson, Phillip J Hendrickson, Dong Song, Theodore W Berger

Annu Int Conf IEEE Eng Med Biol Soc· August 2013

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Implementation of activity-dependent synaptic plasticity rules for a large-scale biologically realistic model of the hippocampus.
Brian S Robinson, Gene J Yu, Phillip J Hendrickson, Dong Song, Theodore W Berger

Annu Int Conf IEEE Eng Med Biol Soc· August 2013

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Towards a large-scale biologically realistic model of the hippocampus.
Phillip J Hendrickson, Gene J Yu, Brian S Robinson, Dong Song, Theodore W Berger

Annu Int Conf IEEE Eng Med Biol Soc· July 2013

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Islet preconditioning via multimodal microfluidic modulation of intermittent hypoxia.
Joe F Lo, Yong Wang, Alexander Blake, Gene Yu, Tricia A Harvat

Anal Chem· February 2012

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