Publications by authors named "Jan Zrimec"

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Evaluating plant growth-defense trade-offs by modeling the interaction between primary and secondary metabolism.
Jan Zrimec, Sandra Correa, Maja Zagorščak, Marko Petek, Carissa Bleker

Proc Natl Acad Sci U S A· August 2025

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Integration of multi-omics data and deep phenotyping provides insights into responses to single and combined abiotic stress in potato.
Maja Zagorščak, Lamis Abdelhakim, Natalia Yaneth Rodriguez-Granados, Jitka Široká, Arindam Ghatak, Jan Zrimec

Plant Physiol· March 2025

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Amino acid sequence encodes protein abundance shaped by protein stability at reduced synthesis cost.
Filip Buric, Sandra Viknander, Xiaozhi Fu, Oliver Lemke, Oriol Gracia Carmona, Jan Zrimec

Protein Sci· January 2025

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Evidence-based unification of potato gene models with the UniTato collaborative genome browser.
Maja Zagorščak, Jan Zrimec, Carissa Bleker, Nadja Nolte, Mojca Juteršek

Front Plant Sci· June 2024

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A mini-TGA protein modulates gene expression through heterogeneous association with transcription factors.
Špela Tomaž, Marko Petek, Tjaša Lukan, Karmen Pogačar, Katja Stare, Jan Zrimec

Plant Physiol· March 2023

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Toward learning the principles of plant gene regulation.
Jan Zrimec, Aleksej Zelezniak, Kristina Gruden

Trends Plant Sci· December 2022

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Learning deep representations of enzyme thermal adaptation.
Gang Li, Filip Buric, Jan Zrimec, Sandra Viknander, Jens Nielsen

Protein Sci· December 2022

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Controlling gene expression with deep generative design of regulatory DNA.
Jan Zrimec, Xiaozhi Fu, Azam Sheikh Muhammad, Christos Skrekas, Vykintas Jauniskis

Nat Commun· August 2022

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Enhanced metabolism and negative regulation of ER stress support higher erythropoietin production in HEK293 cells.
Rasool Saghaleyni, Magdalena Malm, Noah Moruzzi, Jan Zrimec, Ronia Razavi

Cell Rep· June 2022

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Data mining of Saccharomyces cerevisiae mutants engineered for increased tolerance towards inhibitors in lignocellulosic hydrolysates.
Elena Cámara, Lisbeth Olsson, Jan Zrimec, Aleksej Zelezniak, Cecilia Geijer

Biotechnol Adv· April 2022

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Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends.
Jan Zrimec, Mariia Kokina, Sara Jonasson, Francisco Zorrilla, Aleksej Zelezniak

mBio· October 2021

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Learning the Regulatory Code of Gene Expression.
Jan Zrimec, Filip Buric, Mariia Kokina, Victor Garcia, Aleksej Zelezniak

Front Mol Biosci· June 2021

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Performance of Regression Models as a Function of Experiment Noise.
Gang Li, Jan Zrimec, Boyang Ji, Jun Geng, Johan Larsbrink

Bioinform Biol Insights· June 2021

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Bayesian genome scale modelling identifies thermal determinants of yeast metabolism.
Gang Li, Yating Hu, Jan Zrimec, Hao Luo, Hao Wang

Nat Commun· January 2021

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Multiple plasmid origin-of-transfer regions might aid the spread of antimicrobial resistance to human pathogens.
Jan Zrimec

Microbiologyopen· December 2020

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Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure.
Jan Zrimec, Christoph S Börlin, Filip Buric, Azam Sheikh Muhammad, Rhongzen Chen

Nat Commun· December 2020

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Parallel Factor Analysis Enables Quantification and Identification of Highly Convolved Data-Independent-Acquired Protein Spectra.
Filip Buric, Jan Zrimec, Aleksej Zelezniak

Patterns (N Y)· December 2020

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Determining the Virulence Properties of ST131 Containing Bacteriocin-Encoding Plasmids Using Short- and Long-Read Sequencing and Comparing Them with Those of Other Lineages.
Ana Carolina da Cruz Campos, Francis M Cavallo, Nathália L Andrade, Jan Maarten van Dijl, Natacha Couto, Jan Zrimec

Microorganisms· November 2019

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Natural Microbial Communities Can Be Manipulated by Artificially Constructed Biofilms.
Tomaž Rijavec, Jan Zrimec, Rob van Spanning, Aleš Lapanje

Adv Sci (Weinh)· November 2019

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DNA structure at the plasmid origin-of-transfer indicates its potential transfer range.
Jan Zrimec, Aleš Lapanje

Sci Rep· January 2018

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Bridge-Induced Translocation between and Yeast Genes Models the Genetic Fusion between the Human Orthologs Associated With Acute Myeloid Leukemia.
Valentina Tosato, Nicole West, Jan Zrimec, Dmitri V Nikitin, Giannino Del Sal

Front Oncol· September 2017

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Fast Prediction of DNA Melting Bubbles Using DNA Thermodynamic Stability.
Jan Zrimec, Ales Lapanje

IEEE/ACM Trans Comput Biol Bioinform· July 2016

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Band smearing of PCR amplified bacterial 16S rRNA genes: dependence on initial PCR target diversity.
Jan Zrimec, Rok Kopinč, Tomaž Rijavec, Tatjana Zrimec, Aleš Lapanje

J Microbiol Methods· November 2013

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