Publications by authors named "AS Lapedes"

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Longitudinal Antigenic Sequences and Sites from Intra-Host Evolution (LASSIE) Identifies Immune-Selected HIV Variants.
Peter Hraber, Bette Korber, Kshitij Wagh, Elena E Giorgi, Tanmoy Bhattacharya, Alan S Lapedes

Viruses· October 2015

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Impact of clade, geography, and age of the epidemic on HIV-1 neutralization by antibodies.
Peter Hraber, Bette T Korber, Alan S Lapedes, Robert T Bailer, Michael S Seaman

J Virol· November 2014

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Recurrent signature patterns in HIV-1 B clade envelope glycoproteins associated with either early or chronic infections.
S Gnanakaran, Tanmoy Bhattacharya, Marcus Daniels, Brandon F Keele, Peter T Hraber, Alan S Lapedes

PLoS Pathog· September 2011

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Genetic signatures in the envelope glycoproteins of HIV-1 that associate with broadly neutralizing antibodies.
S Gnanakaran, Marcus G Daniels, Tanmoy Bhattacharya, Alan S Lapedes, Anurag Sethi

PLoS Comput Biol· October 2010

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Influenza vaccine strain selection and recent studies on the global migration of seasonal influenza viruses.
Colin A Russell, Terry C Jones, Ian G Barr, Nancy J Cox, Rebecca J Garten, Alan S Lapedes

Vaccine· September 2008

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The global circulation of seasonal influenza A (H3N2) viruses.
Colin A Russell, Terry C Jones, Ian G Barr, Nancy J Cox, Rebecca J Garten, Alan S Lapedes

Science· April 2008

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Antigenic and genetic evolution of swine influenza A (H3N2) viruses in Europe.
J C de Jong, D J Smith, A S Lapedes, I Donatelli, L Campitelli

J Virol· April 2007

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Mutations, drift, and the influenza archipelago.
Derek J Smith, Alan S Lapedes, Jan C de Jong, Theo M Bestebroer, Terry C Jones

Discov Med· December 2004

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Mapping the antigenic and genetic evolution of influenza virus.
Derek J Smith, Alan S Lapedes, Jan C de Jong, Theo M Bestebroer, Guus F Rimmelzwaan

Science· July 2004

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Recognition of homo- and heterosubtypic variants of influenza A viruses by human CD8+ T lymphocytes.
Adrianus C M Boon, Gerrie de Mutsert, Debbie van Baarle, Derek J Smith, Alan S Lapedes

J Immunol· February 2004

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Probabilistic code for DNA recognition by proteins of the EGR family.
Panayiotis V Benos, Alan S Lapedes, Gary D Stormo

J Mol Biol· November 2002

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Is there a code for protein-DNA recognition? Probab(ilistical)ly. .
Panayiotis V Benos, Alan S Lapedes, Gary D Stormo

Bioessays· May 2002

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Complex systems analysis: a tool for shock research.
T G Buchman, J P Cobb, A S Lapedes, T B Kepler

Shock· October 2001

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Exploring protein sequence space using knowledge-based potentials.
A Babajide, R Farber, I L Hofacker, J Inman, A S Lapedes

J Theor Biol· September 2001

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SAMIE: statistical algorithm for modeling interaction energies.
P V Benos, A S Lapedes, D S Fields, G D Stormo

Pac Symp Biocomput· June 2001

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Genetic correlations in mutation processes.
E Ben-Naim, A S Lapedes

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics· June 1999

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Superadditive correlation.
B G Giraud, J M Heumann, A S Lapedes

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics· May 1999

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Neural networks for determining protein specificity and multiple alignment of binding sites.
J M Heumann, A S Lapedes, G D Stormo

Proc Int Conf Intell Syst Mol Biol· December 1995

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Domain growth, wetting, and scaling in porous media.
DW Grunau, T Lookman, SY Chen, AS Lapedes

Phys Rev Lett· December 1993

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Covariation of mutations in the V3 loop of human immunodeficiency virus type 1 envelope protein: an information theoretic analysis.
B T Korber, R M Farber, D H Wolpert, A S Lapedes

Proc Natl Acad Sci U S A· August 1993

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