Publications by authors named "Aakash Basu"

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Potential of a newly isolated lytic bacteriophage to control Pseudomonas coronafaciens pv. garcae in coffee plants: Molecular characterization with in vitro and ex vivo experiments.
Luan C Mota, Erica C Silva, Carlos A Quinde, Basilio Cieza, Aakash Basu

Enzyme Microb Technol· March 2025

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Probing mechanical selection in diverse eukaryotic genomes through accurate prediction of 3D DNA mechanics.
Jonghan Park, Galina Prokopchuk, Andrew R Popchock, Jingzhou Hao, Ting-Wei Liao, Aakash Basu

bioRxiv· December 2024

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Xylazine induces dopamine release and augments the effects of fentanyl.
Joseph R Trinko, Ethan Foscue, Edward M Kong, Aakash Basu, Anouk M Corstens

J Clin Invest· November 2024

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Frontal Norepinephrine Represents a Threat Prediction Error Under Uncertainty.
Aakash Basu, Jen-Hau Yang, Abigail Yu, Samira Glaeser-Khan, Jocelyne A Rondeau

Biol Psychiatry· August 2024

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Dependence of nucleosome mechanical stability on DNA mismatches.
Thuy T M Ngo, Bailey Liu, Feng Wang, Aakash Basu, Carl Wu

Elife· April 2024

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Molecular Characterization and Genome Mechanical Features of Two Newly Isolated Polyvalent Bacteriophages Infecting pv. .
Erica C Silva, Carlos A Quinde, Basilio Cieza, Aakash Basu, Marta M D C Vila

Genes (Basel)· January 2024

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The impact of the sequence-dependent physical properties of DNA on chromatin dynamics.
Aditi Biswas, Aakash Basu

Curr Opin Struct Biol· December 2023

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A method for assaying DNA flexibility.
Eliz Cirakli, Aakash Basu

Methods· November 2023

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Deciphering the mechanical code of the genome and epigenome.
Aakash Basu, Dmitriy G Bobrovnikov, Basilio Cieza, Juan Pablo Arcon, Zan Qureshi

Nat Struct Mol Biol· December 2022

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-tailed lytic phages: genome mechanical analysis and putative correlation with virion morphogenesis yield.
Victor M Balcão, Aakash Basu, Basilio Cieza, Fernando N Rossi, Carla Pereira

Future Microbiol· September 2022

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Loop-seq: A high-throughput technique to measure the mesoscale mechanical properties of DNA.
Aakash Basu

Methods Enzymol· March 2022

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Cocaine Augments Dopamine-Mediated Inhibition of Neuronal Activity in the Dorsal Bed Nucleus of the Stria Terminalis.
James R Melchior, Rafael E Perez, Gregory J Salimando, Joseph R Luchsinger, Aakash Basu

J Neurosci· July 2021

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DNA mechanics and its biological impact.
Aakash Basu, Dmitriy G Bobrovnikov, Taekjip Ha

J Mol Biol· March 2021

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Measuring DNA mechanics on the genome scale.
Aakash Basu, Dmitriy G Bobrovnikov, Zan Qureshi, Tunc Kayikcioglu, Thuy T M Ngo

Nature· January 2021

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α-adrenergic heteroreceptors are required for stress-induced reinstatement of cocaine conditioned place preference.
Rafael E Perez, Aakash Basu, Bretton P Nabit, Nicholas A Harris, Oakleigh M Folkes

Neuropsychopharmacology· August 2020

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Single-Molecule Analysis and Engineering of DNA Motors.
Sonisilpa Mohapatra, Chang-Ting Lin, Xinyu A Feng, Aakash Basu, Taekjip Ha

Chem Rev· January 2020

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α-Adrenergic Receptor Activation Decreases Parabrachial Nucleus Excitatory Drive onto BNST CRF Neurons and Reduces Their Activity .
Tracy L Fetterly, Aakash Basu, Brett P Nabit, Elias Awad, Kellie M Williford

J Neurosci· January 2019

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Dynamic coupling between conformations and nucleotide states in DNA gyrase.
Aakash Basu, Matthew Hobson, Paul Lebel, Louis E Fernandes, Elsa M Tretter

Nat Chem Biol· June 2018

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Direct mechanical stimulation of tip links in hair cells through DNA tethers.
Aakash Basu, Samuel Lagier, Maria Vologodskaia, Brian A Fabella, A J Hudspeth

Elife· June 2016

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Structural Dynamics and Mechanochemical Coupling in DNA Gyrase.
Aakash Basu, Angelica C Parente, Zev Bryant

J Mol Biol· May 2016

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The light side of the force.
Aakash Basu, Taekjip Ha

Elife· February 2016

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Gold rotor bead tracking for high-speed measurements of DNA twist, torque and extension.
Paul Lebel, Aakash Basu, Florian C Oberstrass, Elsa M Tretter, Zev Bryant

Nat Methods· April 2014

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Recent developments in single-molecule DNA mechanics.
Zev Bryant, Florian C Oberstrass, Aakash Basu

Curr Opin Struct Biol· June 2012

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ATP binding controls distinct structural transitions of Escherichia coli DNA gyrase in complex with DNA.
Aakash Basu, Allyn J Schoeffler, James M Berger, Zev Bryant

Nat Struct Mol Biol· April 2012

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Dynamics of chromatin decondensation reveals the structural integrity of a mechanically prestressed nucleus.
Aprotim Mazumder, T Roopa, Aakash Basu, L Mahadevan, G V Shivashankar

Biophys J· September 2008

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