Publications by authors named "Aaron Duffy"

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Climate niches structure a regional hybrid zone in Sphagnum (peatmoss, Bryophyta).
A Jonathan Shaw, Aaron M Duffy, Blanka Aguero, Marta Nieto-Lugilde, Karn Imwattana

Am J Bot· December 2025

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Ecological differentiation and sympatry of cryptic species in the Sphagnum magellanicum complex (Bryophyta).
Marta Nieto-Lugilde, Diego Nieto-Lugilde, Bryan Piatkowski, Aaron M Duffy, Sean C Robinson

Am J Bot· September 2024

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Parallel patterns of genetic diversity and structure in circumboreal species of the Sphagnum capillifolium complex.
Karn Imwattana, Blanka Aguero, Marta Nieto-Lugilde, Aaron Duffy, Juan Jaramillo-Chico

Am J Bot· May 2024

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Divergent selection and climate adaptation fuel genomic differentiation between sister species of Sphagnum (peat moss).
Bryan Piatkowski, David J Weston, Blanka Aguero, Aaron Duffy, Karn Imwattana

Ann Bot· November 2023

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Clonality, local population structure and gametophyte sex ratios in cryptic species of the Sphagnum magellanicum complex.
A Jonathan Shaw, Aaron M Duffy, Marta Nieto-Lugilde, Blanka Aguero, Scott Schuette

Ann Bot· October 2023

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Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics.
Adam L Healey, Bryan Piatkowski, John T Lovell, Avinash Sreedasyam, Sarah B Carey, Aaron Duffy

Nat Plants· February 2023

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Phylogenomic structure and speciation in an emerging model: the Sphagnum magellanicum complex (Bryophyta).
A Jonathan Shaw, Bryan Piatkowski, Aaron M Duffy, Blanka Aguero, Karn Imwattana

New Phytol· November 2022

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Demographic history and gene flow in the peatmosses and (Bryophyta: Sphagnaceae).
Karn Imwattana, Blanka Aguero, Aaron Duffy, A Jonathan Shaw

Ecol Evol· November 2022

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Phylogenetic structure in the Sphagnum recurvum complex (Bryophyta) in relation to taxonomy and geography.
Aaron M Duffy, Blanka Aguero, Hans K Stenøien, Kjell Ivar Flatberg, Michael S Ignatov

Am J Bot· September 2020

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Genotyping-by-sequencing for Populus population genomics: an assessment of genome sampling patterns and filtering approaches.
Martin P Schilling, Paul G Wolf, Aaron M Duffy, Hardeep S Rai, Carol A Rowe

PLoS One· January 2015

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Between two fern genomes.
Emily B Sessa, Jo Ann Banks, Michael S Barker, Joshua P Der, Aaron M Duffy

Gigascience· October 2014

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Promotion of hepatocarcinogenesis by perfluoroalkyl acids in rainbow trout.
Abby D Benninghoff, Gayle A Orner, Clarissa H Buchner, Jerry D Hendricks, Aaron M Duffy

Toxicol Sci· January 2012

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The evolution of chloroplast genes and genomes in ferns.
Paul G Wolf, Joshua P Der, Aaron M Duffy, Jacob B Davidson, Amanda L Grusz

Plant Mol Biol· July 2011

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Complete plastome sequences of Equisetum arvense and Isoetes flaccida: implications for phylogeny and plastid genome evolution of early land plant lineages.
Kenneth G Karol, Kathiravetpillai Arumuganathan, Jeffrey L Boore, Aaron M Duffy, Karin D E Everett

BMC Evol Biol· October 2010

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The evolution of chloroplast genome structure in ferns.
Paul G Wolf, Jessie M Roper, Aaron M Duffy

Genome· September 2010

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Chloroplast genome sequence of the moss Tortula ruralis: gene content, polymorphism, and structural arrangement relative to other green plant chloroplast genomes.
Melvin J Oliver, Andrew G Murdock, Brent D Mishler, Jennifer V Kuehl, Jeffrey L Boore, Aaron M Duffy

BMC Genomics· February 2010

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Conservation of selection on matK following an ancient loss of its flanking intron.
Aaron M Duffy, Scot A Kelchner, Paul G Wolf

Gene· June 2009

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A highly efficient system to produce infectious human papillomavirus: Elucidation of natural virus-host interactions.
Louise T Chow, Aaron A Duffy, Hsu-Kun Wang, Thomas R Broker

Cell Cycle· May 2009

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Robust production and passaging of infectious HPV in squamous epithelium of primary human keratinocytes.
Hsu-Kun Wang, Aaron A Duffy, Thomas R Broker, Louise T Chow

Genes Dev· January 2009

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Localization of AU-rich element-containing mRNA in cytoplasmic granules containing exosome subunits.
Wei-Jye Lin, Aaron Duffy, Ching-Yi Chen

J Biol Chem· July 2007

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Dynamic localization of the human papillomavirus type 11 origin binding protein E2 through mitosis while in association with the spindle apparatus.
Luan D Dao, Aaron Duffy, Brian A Van Tine, Shwu-Yuan Wu, Cheng-Ming Chiang

J Virol· May 2006

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Transcriptional regulation of the AT1 receptor gene in immortalized human trophoblast cells.
Aaron A Duffy, Mickey M Martin, Terry S Elton

Biochim Biophys Acta· November 2004

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Translation of the human angiotensin II type 1 receptor mRNA is mediated by a highly efficient internal ribosome entry site.
Mickey M Martin, Joseph A Garcia, Joseph D McFarland, Aaron A Duffy, James P Gregson

Mol Cell Endocrinol· December 2003

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