Publications by authors named "Abdul Rafi"

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A community effort to optimize sequence-based deep learning models of gene regulation.
Abdul Muntakim Rafi, Daria Nogina, Dmitry Penzar, Dohoon Lee, Danyeong Lee

Nat Biotechnol· August 2025

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Unraveling the regulatory dynamics of bidirectional promoters for modulating gene co-expression and metabolic flux in Saccharomyces cerevisiae.
Zimo Jin, Yueming Dong, Abdul Muntakim Rafi, Md Mohsin Patwary, Catherine Xu

Nucleic Acids Res· June 2025

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Mid-term to long-term outcome and risk factors for failure of 158 hips with two-stage revision for periprosthetic hip joint infection.
Moatasem Abuelnour, Conor McNamee, Abdul Basit Rafi, Wolf Hohlbein, Peter Keogh

J Bone Jt Infect· February 2025

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Regulatory activity is the default DNA state in eukaryotes.
Ishika Luthra, Cassandra Jensen, Xinyi E Chen, Asfar Lathif Salaudeen, Abdul Muntakim Rafi

Nat Struct Mol Biol· March 2024

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Evaluation and optimization of sequence-based gene regulatory deep learning models.
Abdul Muntakim Rafi, Daria Nogina, Dmitry Penzar, Dohoon Lee, Danyeong Lee

bioRxiv· February 2024

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LegNet: a best-in-class deep learning model for short DNA regulatory regions.
Dmitry Penzar, Daria Nogina, Elizaveta Noskova, Arsenii Zinkevich, Georgy Meshcheryakov, Abdul Muntakim Rafi

Bioinformatics· August 2023

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GIL: a python package for designing custom indexing primers.
Nicholas Mateyko, Omar Tariq, Xinyi E Chen, Will Cheney, Asfar Lathif Salaudeen, Abdul Muntakim Rafi

Bioinformatics· June 2023

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Soil solarization: a safe, affective and practicable technique for the control of soil born fungi and nematodes.
Nafees Bacha, Najma Ayub, Yasmin Ahmad, Muhammad Abbas, Abdul Rafi

Pak J Biol Sci· January 2007

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