Publications by authors named "Adam Allred"

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The Next Frontier in Tuberculosis Investigation: Automated Whole Genome Sequencing for Analysis.
Justin H J Ng, Lina Castro, Andrew Gorzalski, Adam Allred, Danielle Siao

Int J Mol Sci· July 2024

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Targeted Next-Generation Sequencing Assay for Direct Detection and Serotyping of Salmonella from Enrichment.
Andrew Lin, Atul Singh, Adam Allred, Marc Allard, Doug Waltman

J Food Prot· April 2024

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A Targeted Sequencing Assay for Serotyping Using AgriSeq Technology.
Jacob R Elder, Pina M Fratamico, Yanhong Liu, David S Needleman, Lori Bagi, Adam Allred

Front Microbiol· January 2021

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Comparison of O-Antigen Gene Clusters of All O-Serogroups of Escherichia coli and Proposal for Adopting a New Nomenclature for O-Typing.
Chitrita DebRoy, Pina M Fratamico, Xianghe Yan, GianMarco Baranzoni, Yanhong Liu, Adam Allred

PLoS One· July 2016

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Correction: Comparison of O-Antigen Gene Clusters of All O-Serogroups of Escherichia coli and Proposal for Adopting a New Nomenclature for O-Typing.
Chitrita DebRoy, Pina M Fratamico, Xianghe Yan, GianMarco Baranzoni, Yanhong Liu, Adam Allred

PLoS One· April 2016

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Targeted amplification for enhanced detection of biothreat agents by next-generation sequencing.
Shea N Gardner, Kenneth G Frey, Cassie L Redden, James B Thissen, Jonathan E Allen, Adam F Allred

BMC Res Notes· November 2015

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Listeria floridensis sp. nov., Listeria aquatica sp. nov., Listeria cornellensis sp. nov., Listeria riparia sp. nov. and Listeria grandensis sp. nov., from agricultural and natural environments.
Henk C den Bakker, Steven Warchocki, Emily M Wright, Adam F Allred, Christina Ahlstrom

Int J Syst Evol Microbiol· June 2014

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VIPR HMM: a hidden Markov model for detecting recombination with microbial detection microarrays.
Adam F Allred, Hilary Renshaw, Scott Weaver, Robert B Tesh, David Wang

Bioinformatics· November 2012

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VIPR: A probabilistic algorithm for analysis of microbial detection microarrays.
Adam F Allred, Guang Wu, Tuya Wulan, Kael F Fischer, Michael R Holbrook

BMC Bioinformatics· July 2010

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Metagenomic analysis of human diarrhea: viral detection and discovery.
Stacy R Finkbeiner, Adam F Allred, Phillip I Tarr, Eileen J Klein, Carl D Kirkwood

PLoS Pathog· February 2008

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