Publications by authors named "Adam Jarmula"

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CacyBP/SIP - RPL6 interaction: potential influence on ribosome function.
Ewelina Jurewicz, Małgorzata Maksymowicz-Trivedi, Omid Saberi-Khomami, Olga Iwańska, Agata Starosta

Amino Acids· July 2025

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[Aging, β-amyloid, Alzheimer's - Opinion].
Dariusz Stępkowski, Adam Jarmuła

Postepy Biochem· June 2025

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Characterization of a novel GRHL2 mutation reveals molecular mechanisms underlying autosomal dominant hearing loss (DFNA28): insights from structural and functional studies.
Dominika Oziębło, Natalia Bałdyga, Marcin L Leja, Adam Jarmuła, Tomasz Wilanowski

Hum Mol Genet· April 2025

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Consecutive Aromatic Residues Are Required for Improved Efficacy of β-Sheet Breakers.
Adam Jarmuła, Monika Zubalska, Dariusz Stępkowski

Int J Mol Sci· May 2022

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β-sheet breakers with consecutive phenylalanines: Insights into mechanism of dissolution of β-amyloid fibrils.
Adam Jarmuła, Jan Ludwiczak, Dariusz Stępkowski

Proteins· July 2021

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Molecular Mechanism of Thymidylate Synthase Inhibition by N-Hydroxy-dCMP in View of Spectrophotometric and Crystallographic Studies.
Piotr Maj, Adam Jarmuła, Piotr Wilk, Małgorzata Prokopowicz, Wojciech Rypniewski

Int J Mol Sci· April 2021

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Advanced Spectroscopy and APBS Modeling for Determination of the Role of His190 and Trp103 in Mouse Thymidylate Synthase Interaction with Selected dUMP Analogues.
Małgorzata Prokopowicz, Adam Jarmuła, Yannick Casamayou-Boucau, Fiona Gordon, Alan Ryder

Int J Mol Sci· March 2021

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Interactions between motor domains in kinesin-14 Ncd - a molecular dynamics study.
Jan Ludwiczak, Ewa Szczęsna, Antônio Marinho da Silva Neto, Piotr Cieplak, Andrzej A Kasprzak

Biochem J· September 2019

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ANO5 mutations in the Polish limb girdle muscular dystrophy patients: Effects on the protein structure.
Adam Jarmula, Anna Łusakowska, Jakub P Fichna, Malgorzata Topolewska, Anna Macias

Sci Rep· August 2019

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Combining Rosetta with molecular dynamics (MD): A benchmark of the MD-based ensemble protein design.
Jan Ludwiczak, Adam Jarmula, Stanislaw Dunin-Horkawicz

J Struct Biol· July 2018

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Crystal structures of nematode (parasitic T. spiralis and free living C. elegans), compared to mammalian, thymidylate synthases (TS). Molecular docking and molecular dynamics simulations in search for nematode-specific inhibitors of TS.
Adam Jarmuła, Piotr Wilk, Piotr Maj, Jan Ludwiczak, Anna Dowierciał

J Mol Graph Model· October 2017

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Human dihydrofolate reductase and thymidylate synthase form a complex in vitro and co-localize in normal and cancer cells.
Anna Antosiewicz, Adam Jarmuła, Dorota Przybylska, Grażyna Mosieniak, Joanna Szczepanowska

J Biomol Struct Dyn· May 2017

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Phosphorylation of thymidylate synthase affects slow-binding inhibition by 5-fluoro-dUMP and N(4)-hydroxy-dCMP.
Jan Ludwiczak, Piotr Maj, Piotr Wilk, Tomasz Frączyk, Tomasz Ruman

Mol Biosyst· April 2016

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Properties of phosphorylated thymidylate synthase.
Tomasz Frączyk, Tomasz Ruman, Piotr Wilk, Paweł Palmowski, Adelina Rogowska-Wrzesinska

Biochim Biophys Acta· December 2015

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Crystal structure of mouse thymidylate synthase in tertiary complex with dUMP and raltitrexed reveals N-terminus architecture and two different active site conformations.
Anna Dowierciał, Piotr Wilk, Wojciech Rypniewski, Wojciech Rode, Adam Jarmuła

Biomed Res Int· February 2015

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Crystal structure of phosphoramide-phosphorylated thymidylate synthase reveals pSer127, reflecting probably pHis to pSer phosphotransfer.
Piotr Wilk, Adam Jarmuła, Tomasz Ruman, Katarzyna Banaszak, Wojciech Rypniewski

Bioorg Chem· February 2014

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The β-sheet breakers and π-stacking.
Adam Jarmuła, Dariusz Stępkowski

J Pept Sci· June 2013

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Computational study of the effects of protein tyrosine nitrations on the catalytic activity of human thymidylate synthase.
Adam Jarmuła, Wojciech Rode

J Comput Aided Mol Des· January 2013

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Tyrosine nitration affects thymidylate synthase properties.
Elżbieta Dąbrowska-Maś, Tomasz Frączyk, Tomasz Ruman, Karolina Radziszewska, Piotr Wilk

Org Biomol Chem· January 2012

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The aromaticity of 5,6-dihydroborauracil, borauracil and benzoborauracil systems.
Tomasz Ruman, Adam Jarmuła, Wojciech Rode

Bioorg Chem· October 2010

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Mechanism of influence of phosphorylation on serine 124 on a decrease of catalytic activity of human thymidylate synthase.
Adam Jarmuła, Tomasz Fraczyk, Piotr Cieplak, Wojciech Rode

Bioorg Med Chem· May 2010

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A molecular modeling study of the interaction of 2'-fluoro-substituted analogues of dUMP/FdUMP with thymidylate synthase.
Adam Jarmuła, Anna Dowierciał, Wojciech Rode

Bioorg Med Chem Lett· April 2008

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The effect of 5-substitution in the pyrimidine ring of dUMP on the interaction with thymidylate synthase: molecular modeling and QSAR.
Adam Jarmuła, Piotr Cieplak, Tadeusz M Krygowski, Wojciech Rode

Bioorg Med Chem· March 2007

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5,10-Methylene-5,6,7,8-tetrahydrofolate conformational transitions upon binding to thymidylate synthase: molecular mechanics and continuum solvent studies.
Adam Jarmuła, Piotr Cieplak, William R Montfort

J Comput Aided Mol Des· February 2005

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Relative free energies of binding to thymidylate synthase of 2- and/or 4-thio and/or 5-fluoro analogues of dUMP.
Adam Jarmuła, Piotr Cieplak, Andrzej Leś, Wojciech Rode

J Comput Aided Mol Des· October 2003

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