Publications by authors named "Adrian Cookson"

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Evidence for a Role of Extraintestinal Pathogenic Escherichia coli, Enterococcus faecalis and Streptococcus gallolyticus in the Aetiology of Exudative Cloacitis in the Critically Endangered Kākāpō (Strigops habroptilus).
Rebecca K French, Stephanie J Waller, Janelle R Wierenga, Rebecca M Grimwood, James Hodgkinson-Bean, Adrian Cookson

Mol Ecol· December 2025

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Genotyping Reveals Potential Sources of Human Leptospirosis Outbreaks in Aotearoa New Zealand.
Shahista Nisa, Stuart Littlejohn, Ahmed Fayaz, Scarlet Deen, Maryna Sokolova, Adrian L Cookson

Zoonoses Public Health· November 2025

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Shiga toxin-producing illness in Aotearoa | New Zealand, 2016-2022: epidemiological, genomic and traditional typing analyses provide insight into a significant endemic disease while highlighting knowledge gaps.
Jacqueline Wright, David Duncan, Hugo Strydom, Shevaun Paine, Sarah Jefferies, Adrian L Cookson

Front Microbiol· July 2025

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New Campylobacter Lineages in New Zealand Freshwater: Pathogenesis and Public Health Implications.
Adrian L Cookson, Sara Burgess, Anne C Midwinter, Jonathan C Marshall, Marie Moinet

Environ Microbiol· December 2024

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Impact of land-use and fecal contamination on Escherichia populations in environmental samples.
Adrian L Cookson, Jonathan C Marshall, Patrick J Biggs, Lynn E Rogers, Rose M Collis

Sci Rep· December 2024

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Assessing antimicrobial resistance in pasture-based dairy farms: a 15-month surveillance study in New Zealand.
Rose M Collis, Patrick J Biggs, Sara A Burgess, Anne C Midwinter, Jinxin Liu, Adrian L Cookson

Appl Environ Microbiol· November 2024

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Population structure and pathogen interaction of Escherichia coli in freshwater: Implications of land-use for water quality and public health in Aotearoa New Zealand.
Adrian L Cookson, Meg Devane, Jonathan C Marshall, Marie Moinet, Amanda Gardner

Environ Microbiol Rep· August 2024

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Development of a multiplex droplet digital PCR assay for simultaneous detection and quantification of Escherichia coli, E. marmotae, and E. ruysiae in water samples.
Marie Moinet, Rose M Collis, Lynn Rogers, Megan L Devane, Patrick J Biggs, Adrian L Cookson

J Microbiol Methods· May 2024

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Draft genome sequences of spp. isolates from New Zealand environmental sources.
Patrick J Biggs, Marie Moinet, Lynn E Rogers, Megan Devane, Richard Muirhead, Adrian L Cookson

Microbiol Resour Announc· March 2024

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Straw-based compost cultivation disproportionally contributes to the environmental persistence of antibiotic resistance from raw cattle manure to organic vegetables.
Yunlong Gao, Jinxin Liu, Yi Fang, Xinming Xu, Fei Wang, Adrian L Cookson

Microbiol Res· January 2024

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Impact of systemic antimicrobial therapy on the faecal microbiome in symptomatic dairy cows.
Rose M Collis, Patrick J Biggs, Sara A Burgess, Anne C Midwinter, Gale Brightwell, Adrian L Cookson

PLoS One· January 2024

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High-resolution genomic analysis to investigate the impact of the invasive brushtail possum (Trichosurus vulpecula) and other wildlife on microbial water quality assessments.
Marie Moinet, Lynn Rogers, Patrick Biggs, Jonathan Marshall, Richard Muirhead, Adrian Cookson

PLoS One· January 2024

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Corrigendum: The characterisation of antimicrobial resistant from dairy calves.
Merning Mwenifumbo, Adrian L Cookson, Shengguo Zhao, Ahmed Fayaz, A Springer Browne

J Med Microbiol· October 2023

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The characterisation of antimicrobial resistant from dairy calves.
Merning Mwenifumbo, Adrian L Cookson, Shengguo Zhao, Ahmed Fayaz, A Springer Browne

J Med Microbiol· August 2023

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Light tolerance of extended spectrum β-lactamase producing Escherichia coli strains after repetitive exposure to far-UVC and blue LED light.
Amanda Gardner, Aswathi Soni, Adrian Cookson, Gale Brightwell

J Appl Microbiol· July 2023

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Whole genome sequence analysis of ESBL-producing recovered from New Zealand freshwater sites.
Sara A Burgess, Marie Moinet, Gale Brightwell, Adrian L Cookson

Microb Genom· October 2022

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Prevalence and distribution of extended-spectrum β-lactamase and AmpC-producing in two New Zealand dairy farm environments.
Rose M Collis, Patrick J Biggs, Sara A Burgess, Anne C Midwinter, Gale Brightwell, Adrian L Cookson

Front Microbiol· August 2022

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Whole-Genome Sequencing and Virulome Analysis of Escherichia coli Isolated from New Zealand Environments of Contrasting Observed Land Use.
Adrian L Cookson, Jonathan C Marshall, Patrick J Biggs, Lynn E Rogers, Rose M Collis

Appl Environ Microbiol· May 2022

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The epidemiology of AmpC-producing isolated from dairy cattle faeces on pasture-fed farms.
Sara A Burgess, Adrian L Cookson, Lisa Brousse, Enrico Ortolani, Jackie Benschop

J Med Microbiol· October 2021

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Effect of Divergent Feeding Regimes During Early Life on the Rumen Microbiota in Calves.
Omar Cristobal-Carballo, Sue A McCoard, Adrian L Cookson, Richard A Laven, Siva Ganesh

Front Microbiol· October 2021

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Effect of Methane Inhibitors on Ruminal Microbiota During Early Life and Its Relationship With Ruminal Metabolism and Growth in Calves.
Omar Cristobal-Carballo, Susan A McCoard, Adrian L Cookson, Siva Ganesh, Katherine Lowe

Front Microbiol· September 2021

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Transmission Dynamics of Shiga Toxin-Producing Escherichia coli in New Zealand Cattle from Farm to Slaughter.
A Springer Browne, Anne C Midwinter, Helen Withers, Adrian L Cookson, Patrick J Biggs

Appl Environ Microbiol· May 2021

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Fecal indicator bacteria from environmental sources; strategies for identification to improve water quality monitoring.
Megan L Devane, Elaine Moriarty, Louise Weaver, Adrian Cookson, Brent Gilpin

Water Res· October 2020

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Genomic epidemiology and carbon metabolism of Escherichia coli serogroup O145 reflect contrasting phylogenies.
Rose M Collis, Patrick J Biggs, Anne C Midwinter, A Springer Browne, David A Wilkinson, Adrian L Cookson

PLoS One· August 2020

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gndDb, a Database of Partial Sequences To Assist with Analysis of Escherichia coli Communities Using High-Throughput Sequencing.
Adrian L Cookson, David W Lacher, Flemming Scheutz, David A Wilkinson, Patrick J Biggs

Microbiol Resour Announc· August 2019

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