Publications by authors named "Aidong Yang"

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Deep Learning-Based Prediction of Enzyme Optimal pH and Design of Point Mutations to Improve Acid Resistance.
Sizhe Qiu, Nan-Kai Wang, Yishun Lu, Jin-Song Gong, Jin-Song Shi, Aidong Yang

ACS Synth Biol· December 2025

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Proteome trade-off between primary and secondary metabolism shapes acid stress induced bacterial exopolysaccharide production.
Sizhe Qiu, Aidong Yang, Xinyu Yang, Haojie Ni, Wenlu Li, Zhennai Yang

Metab Eng· September 2025

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Exploring the pathogenesis of acute lung injury and its treatment through Traditional Chinese Medicine: a state-of-the-art review.
Jiayun Wang, Zhiqiang Yan, Xinxin Zhang, Shun Wang, Liangbo Jiao, Aidong Yang

Front Pharmacol· September 2025

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Modeling and Feasibility Assessment of Mineral Carbonation Based on Biological pH Swing for Atmospheric CO Removal.
Yukun Zhang, Spencer Long, Manon T Duret, Liam A Bullock, Phyllis Lam, Aidong Yang

ACS Sustain Chem Eng· May 2025

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Seq2Topt: a sequence-based deep learning predictor of enzyme optimal temperature.
Sizhe Qiu, Bozhen Hu, Jing Zhao, Weiren Xu, Aidong Yang

Brief Bioinform· March 2025

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Mechanism of Qingdai in Alleviating Acute Lung Injury by Inhibiting the JAK2/STAT3 Signaling Pathway.
Lu Qi, Shun Wang, Tao Guo, Zhuocao Qi, Suwan Wu, Aidong Yang

J Inflamm Res· December 2024

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Assembly of functional microbial ecosystems: from molecular circuits to communities.
Shengbo Wu, Yongsheng Zhou, Lei Dai, Aidong Yang, Jianjun Qiao

FEMS Microbiol Rev· November 2024

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Systematic elucidation of independently modulated genes in Lactiplantibacillus plantarum reveals a trade-off between secondary and primary metabolism.
Sizhe Qiu, Yidi Huang, Shishun Liang, Hong Zeng, Aidong Yang

Microb Biotechnol· February 2024

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Food-energy-water nexus optimization brings substantial reduction of urban resource consumption and greenhouse gas emissions.
Pengpeng Zhang, Lixiao Zhang, Yan Hao, Ming Xu, Mingyue Pang, Aidong Yang

PNAS Nexus· February 2024

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Xuanbai Chengqi Decoction alleviates acute lung injury by inhibiting NLRP3 inflammasome.
Shun Wang, Feifei Lin, Chengxi Zhang, Dan Gao, Zhuocao Qi, Aidong Yang

J Ethnopharmacol· January 2024

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Network Pharmacology and Experimental Validation of the Anti-Inflammatory Effect of Tingli Dazao Xiefei Decoction in Acute Lung Injury Treatment.
Chengxi Zhang, Xiaoqian Li, Dan Gao, Huahe Zhu, Shun Wang, Aidong Yang

J Inflamm Res· December 2023

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DLTKcat: deep learning-based prediction of temperature-dependent enzyme turnover rates.
Sizhe Qiu, Simiao Zhao, Aidong Yang

Brief Bioinform· November 2023

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Dynamic metagenome-scale metabolic modeling of a yogurt bacterial community.
Sizhe Qiu, Hong Zeng, Zhijie Yang, Wei-Lian Hung, Bei Wang, Aidong Yang

Biotechnol Bioeng· August 2023

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Flux balance analysis-based metabolic modeling of microbial secondary metabolism: Current status and outlook.
Sizhe Qiu, Aidong Yang, Hong Zeng

PLoS Comput Biol· August 2023

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Global green hydrogen-based steel opportunities surrounding high quality renewable energy and iron ore deposits.
Alexandra Devlin, Jannik Kossen, Haulwen Goldie-Jones, Aidong Yang

Nat Commun· May 2023

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Quorum sensing-based interactions among drugs, microbes, and diseases.
Shengbo Wu, Shujuan Yang, Manman Wang, Nan Song, Jie Feng, Aidong Yang

Sci China Life Sci· January 2023

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Development of a system model to predict flows and performance of regional waste management planning: A case study of England.
Kok Siew Ng, Aidong Yang

J Environ Manage· January 2023

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Integrated network pharmacology and intestinal flora analysis to determine the protective effect of Xuanbai-Chengqi decoction on lung and gut injuries in influenza virus-infected mice.
Jinlin Huo, Ting Wang, Bokai Wei, Xunlong Shi, Aidong Yang

J Ethnopharmacol· November 2022

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Machine learning aided construction of the quorum sensing communication network for human gut microbiota.
Shengbo Wu, Jie Feng, Chunjiang Liu, Hao Wu, Zekai Qiu, Shuyang Sun, Aidong Yang

Nat Commun· June 2022

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Impact of fast-track regulatory designations on strategic commercialization decisions for autologous cell therapies.
Ching Lam, Edward Meinert, Aidong Yang, Zhanfeng Cui

Regen Med· March 2022

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Regional conditions shape the food-energy-land nexus of low-carbon indoor farming.
Till Weidner, Aidong Yang, Florian Forster, Michael W Hamm

Nat Food· March 2022

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Kinetics-informed global assessment of mine tailings for CO removal.
Liam A Bullock, Aidong Yang, Richard C Darton

Sci Total Environ· February 2022

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Combinational quorum sensing devices for dynamic control in cross-feeding cocultivation.
Shengbo Wu, Yanting Xue, Shujuan Yang, Chengyang Xu, Chunjiang Liu, Aidong Yang

Metab Eng· September 2021

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Understanding and mathematical modelling of cellular resource allocation in microorganisms: a comparative synthesis.
Hong Zeng, Reza Rohani, Wei E Huang, Aidong Yang

BMC Bioinformatics· September 2021

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Mechanism of protective effect of xuan-bai-cheng-qi decoction on LPS-induced acute lung injury based on an integrated network pharmacology and RNA-sequencing approach.
Huahe Zhu, Shun Wang, Cong Shan, Xiaoqian Li, Bo Tan, Yunxiang Yang, Aidong Yang

Respir Res· June 2021

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