Publications by authors named "Alan O'Callaghan"

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Scalable inference of transcriptional variability with BASiCS.
Alan O'Callaghan, Catalina A Vallejos

J Theor Biol· August 2025

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BASiCS workflow: a step-by-step analysis of expression variability using single cell RNA sequencing data.
Alan O'Callaghan, Nils Eling, John C Marioni, Catalina A Vallejos

F1000Res· July 2025

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GelGenie: an AI-powered framework for gel electrophoresis image analysis.
Matthew Aquilina, Nathan J W Wu, Kiros Kwan, Filip Bušić, James Dodd, Alan O'Callaghan

Nat Commun· May 2025

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Open and reusable deep learning for pathology with WSInfer and QuPath.
Jakub R Kaczmarzyk, Alan O'Callaghan, Fiona Inglis, Swarad Gat, Tahsin Kurc

NPJ Precis Oncol· January 2024

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Transcriptional dynamics of colorectal cancer risk associated variation at 11q23.1 correlate with tuft cell abundance and marker expression in silico.
Bradley T Harris, Vidya Rajasekaran, James P Blackmur, Alan O'Callaghan, Kevin Donnelly

Sci Rep· August 2022

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A sensitive and affordable multiplex RT-qPCR assay for SARS-CoV-2 detection.
Martin A M Reijns, Louise Thompson, Juan Carlos Acosta, Holly A Black, Francisco J Sanchez-Luque, Alan O'Callaghan

PLoS Biol· December 2020

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heatmaply: an R package for creating interactive cluster heatmaps for online publishing.
Tal Galili, Alan O'Callaghan, Jonathan Sidi, Carson Sievert

Bioinformatics· May 2018

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Species-specific regulation of angiogenesis by glucocorticoids reveals contrasting effects on inflammatory and angiogenic pathways.
Ruth Morgan, John Keen, Daniel Halligan, Alan O'Callaghan, Ruth Andrew

PLoS One· April 2018

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