Publications by authors named "Alan Perez-Rathke"

Claim this Profile
S
Structure-based pathogenicity relationship identifier for predicting effects of single missense variants and discovery of higher-order cancer susceptibility clusters of mutations.
Boshen Wang, Xue Lei, Wei Tian, Alan Perez-Rathke, Yan-Yuan Tseng

Brief Bioinform· July 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Minimalistic 3D chromatin models: Sparse interactions in single cells drive the chromatin fold and form many-body units.
Jie Liang, Alan Perez-Rathke

Curr Opin Struct Biol· December 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Simulation of pH-Dependent, Loop-Based Membrane Protein Gating Using Pretzel.
Alan Perez-Rathke, Monifa A V Fahie, Christina M Chisholm, Min Chen, Jie Liang

Methods Mol Biol· March 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
H
High-resolution single-cell 3D-models of chromatin ensembles during Drosophila embryogenesis.
Qiu Sun, Alan Perez-Rathke, Daniel M Czajkowsky, Zhifeng Shao, Jie Liang

Nat Commun· January 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
CHROMATIX: computing the functional landscape of many-body chromatin interactions in transcriptionally active loci from deconvolved single cells.
Alan Perez-Rathke, Qiu Sun, Boshen Wang, Valentina Boeva, Zhifeng Shao

Genome Biol· January 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Alterations in Chromatin Folding Patterns in Cancer Variant-Enriched Loci.
Alan Perez-Rathke, Samira Mali, Lin Du, Jie Liang

IEEE EMBS Int Conf Biomed Health Inform· May 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Structure-based Method for Predicting Deleterious Missense SNPs.
Boshen Wang, Wei Tian, Xue Lei, Alan Perez-Rathke, Yan Yuan Tseng

IEEE EMBS Int Conf Biomed Health Inform· May 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Predicting Oncogenic Missense Mutations.
Xue Lei, Boshen Wang, Alan Perez-Rathke, Wei Tian, Chia-Yi Chou

IEEE EMBS Int Conf Biomed Health Inform· May 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A General Method for Predicting Amino Acid Residues Experiencing Hydrogen Exchange.
Boshen Wang, Alan Perez-Rathke, Renhao Li, Jie Liang

IEEE EMBS Int Conf Biomed Health Inform· March 2018

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Mechanism of OmpG pH-Dependent Gating from Loop Ensemble and Single Channel Studies.
Alan Perez-Rathke, Monifa A Fahie, Christina Chisholm, Jie Liang, Min Chen

J Am Chem Soc· January 2018

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
Interpreting personal transcriptomes: personalized mechanism-scale profiling of RNA-seq data.
Alan Perez-Rathke, Haiquan Li, Yves A Lussier

Pac Symp Biocomput· December 2013

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
H
High Performance Multiple Sequence Alignment System for Pyrosequencing Reads from Multiple Reference Genomes.
Fahad Saeed, Alan Perez-Rathke, Jaroslaw Gwarnicki, Tanya Berger-Wolf, Ashfaq Khokhar

J Parallel Distrib Comput· January 2012

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis