Publications by authors named "Alejandro Berrio"

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Lepidopteran scale cells derive from sensory organ precursors through a canonical lineage.
Ling S Loh, Kyle A DeMarr, Martina Tsimba, Christa Heryanto, Alejandro Berrio

Development· March 2025

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Single-Cell Transcriptomics Reveals Evolutionary Reconfiguration of Embryonic Cell Fate Specification in the Sea Urchin Heliocidaris erythrogramma.
Abdull J Massri, Alejandro Berrio, Anton Afanassiev, Laura Greenstreet, Krista Pipho

Genome Biol Evol· January 2025

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An RNA interference approach for functional studies in the sea urchin and its use in analysis of nodal signaling gradients.
Keen Wilson, Carl Manner, Esther Miranda, Alejandro Berrio, Gregory A Wray

Dev Biol· December 2024

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Reprogramming of cells during embryonic transfating: overcoming a reprogramming block.
Alejandro Berrio, Esther Miranda, Abdull J Massri, Anton Afanassiev, Geoffrey Schiebinger

Development· December 2024

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Contrasting the development of larval and adult body plans during the evolution of biphasic lifecycles in sea urchins.
Brennan D McDonald, Abdull J Massri, Alejandro Berrio, Maria Byrne, David R McClay

Development· October 2024

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An RNA interference approach for functional studies in the sea urchin and its use in analysis of Nodal signaling gradients.
Keen Wilson, Carl Manner, Esther Miranda, Alejandro Berrio, Gregory A Wray

bioRxiv· July 2024

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Single-cell transcriptomics reveals evolutionary reconfiguration of embryonic cell fate specification in the sea urchin .
Abdull J Massri, Alejandro Berrio, Anton Afanassiev, Laura Greenstreet, Krista Pipho

bioRxiv· May 2024

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Recent reconfiguration of an ancient developmental gene regulatory network in Heliocidaris sea urchins.
Phillip L Davidson, Haobing Guo, Jane S Swart, Abdull J Massri, Allison Edgar, Alejandro Berrio

Nat Ecol Evol· December 2022

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Developmental single-cell transcriptomics in the Lytechinus variegatus sea urchin embryo.
Abdull J Massri, Laura Greenstreet, Anton Afanassiev, Alejandro Berrio, Gregory A Wray

Development· October 2021

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Comparative neurotranscriptomics reveal widespread species differences associated with bonding.
Joel A Tripp, Alejandro Berrio, Lisa A McGraw, Mikhail V Matz, Jamie K Davis

BMC Genomics· May 2021

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Methodologies for Following EMT In Vivo at Single Cell Resolution.
Abdull J Massri, Geoffrey R Schiebinger, Alejandro Berrio, Lingyu Wang, Gregory A Wray

Methods Mol Biol· March 2021

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A coffee berry borer (Hypothenemus hampei) genome assembly reveals a reduced chemosensory receptor gene repertoire and male-specific genome sequences.
Lucio Navarro-Escalante, Erick M Hernandez-Hernandez, Jonathan Nuñez, Flor E Acevedo, Alejandro Berrio

Sci Rep· March 2021

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Positive selection within the genomes of SARS-CoV-2 and other Coronaviruses independent of impact on protein function.
Alejandro Berrio, Valerie Gartner, Gregory A Wray

PeerJ· October 2020

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Chromosomal-Level Genome Assembly of the Sea Urchin Lytechinus variegatus Substantially Improves Functional Genomic Analyses.
Phillip L Davidson, Haobing Guo, Lingyu Wang, Alejandro Berrio, He Zhang

Genome Biol Evol· July 2020

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Identifying branch-specific positive selection throughout the regulatory genome using an appropriate proxy neutral.
Alejandro Berrio, Ralph Haygood, Gregory A Wray

BMC Genomics· May 2020

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Evaluating Chromatin Accessibility Differences Across Multiple Primate Species Using a Joint Modeling Approach.
Lee E Edsall, Alejandro Berrio, William H Majoros, Devjanee Swain-Lenz, Shauna Morrow

Genome Biol Evol· October 2019

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Comparative Analyses of Chromatin Landscape in White Adipose Tissue Suggest Humans May Have Less Beigeing Potential than Other Primates.
Devjanee Swain-Lenz, Alejandro Berrio, Alexias Safi, Gregory E Crawford, Gregory A Wray

Genome Biol Evol· July 2019

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Complex selection on a regulator of social cognition: Evidence of balancing selection, regulatory interactions and population differentiation in the prairie vole Avpr1a locus.
Alejandro Berrio, Rafael F Guerrero, Galina V Aglyamova, Mariam Okhovat, Mikhail V Matz

Mol Ecol· January 2018

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Individual Differences in Social Behavior and Cortical Vasopressin Receptor: Genetics, Epigenetics, and Evolution.
Steven M Phelps, Mariam Okhovat, Alejandro Berrio

Front Neurosci· October 2017

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Sex-specific fitness effects of unpredictable early life conditions are associated with DNA methylation in the avian glucocorticoid receptor.
Dustin R Rubenstein, Hannah Skolnik, Alejandro Berrio, Frances A Champagne, Steven Phelps

Mol Ecol· April 2016

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Sexual fidelity trade-offs promote regulatory variation in the prairie vole brain.
Mariam Okhovat, Alejandro Berrio, Gerard Wallace, Alexander G Ophir, Steven M Phelps

Science· December 2015

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A micro-spreading improvement for spermatogenic chromosomes from Triatominae (Hemiptera-Reduviidae).
Mauricio Camargo, María Adelaida Duque-Correa, Alejandro Berrío

Mem Inst Oswaldo Cruz· May 2006

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