Publications by authors named "Aleksandar D Kostic"

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Specification curve analysis of the TEDDY study reveals large variation in microbiome-based T1D predictive performance.
Samuel Zimmerman, Braden T Tierney, Vy Kim Nguyen, Aleksandar D Kostic, Chirag J Patel

Nat Commun· October 2025

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Adipose tissue-gut microbiome crosstalk in inflammation and thermogenesis.
Erin E Mauney, Marsha C Wibowo, Yu-Hua Tseng, Aleksandar D Kostic

Trends Endocrinol Metab· August 2025

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Yanomami skin microbiome complexity challenges prevailing concepts of healthy skin.
Juliana Durack, Yvette Piceno, Hoang Vuong, Brian Fanelli, David A Good, Aleksandar D Kostic

Nat Commun· July 2025

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A Lactobacillus consortium provides insights into the sleep-exercise-microbiome nexus in proof of concept studies of elite athletes and in the general population.
Tindaro Bongiovanni, Marina Santiago, Kinga Zielinska, Jonathan Scheiman, Carolina Barsa, Aleksandar D Kostic

Microbiome· January 2025

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DNA characterization reveals potential operon-unit packaging of extracellular vesicle cargo from a gut bacterial symbiont.
Byeongyeon Cho, Grace Moore, Loc-Duyen Pham, Chirag J Patel, Aleksandar D Kostic

Res Sq· December 2023

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Erratum for Proctor et al., "Resources To Facilitate Use of the Altered Schaedler Flora (ASF) Mouse Model To Study Microbiome Function".
Alexandra Proctor, Shadi Parvinroo, Tanner Richie, Xinglin Jia, Sonny T M Lee, Aleksandar D Kostic

mSystems· April 2023

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Quantifying Shared and Unique Gene Content across 17 Microbial Ecosystems.
Samuel Zimmerman, Braden T Tierney, Chirag J Patel, Aleksandar D Kostic

mSystems· April 2023

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Editorial: Gut microbiome, metabolites, and immune response in lupus, rheumatoid arthritis, and Sjögren syndrome.
Lidan Zhao, Aleksandar David Kostic, Xuan Zhang

Front Immunol· February 2023

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Reproducible and opposing gut microbiome signatures distinguish autoimmune diseases and cancers: a systematic review and meta-analysis.
Md Zohorul Islam, Melissa Tran, Tao Xu, Braden T Tierney, Chirag Patel, Aleksandar David Kostic

Microbiome· December 2022

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Unraveling Signatures of Local Adaptation among Indigenous Groups from Mexico.
Humberto García-Ortiz, Francisco Barajas-Olmos, Cecilia Contreras-Cubas, Austin W Reynolds, Marlen Flores-Huacuja, Aleksandar David Kostic

Genes (Basel)· November 2022

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Resources to Facilitate Use of the Altered Schaedler Flora (ASF) Mouse Model to Study Microbiome Function.
Alexandra Proctor, Shadi Parvinroo, Tanner Richie, Xinglin Jia, Sonny T M Lee, Aleksandar D Kostic

mSystems· October 2022

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The human microbiome: A coming of age story.
Aleksandar D Kostic

Cell Host Microbe· April 2022

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Systematically assessing microbiome-disease associations identifies drivers of inconsistency in metagenomic research.
Braden T Tierney, Yingxuan Tan, Zhen Yang, Bing Shui, Michaela J Walker, Aleksandar D Kostic

PLoS Biol· March 2022

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Using Cartesian Doubt To Build a Sequencing-Based View of Microbiology.
Braden T Tierney, Erika Szymanski, James R Henriksen, Aleksandar D Kostic, Chirag J Patel

mSystems· October 2021

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The genomic landscape of Mexican Indigenous populations brings insights into the peopling of the Americas.
Humberto García-Ortiz, Francisco Barajas-Olmos, Cecilia Contreras-Cubas, Miguel Ángel Cid-Soto, Emilio J Córdova, Aleksandar David Kostic

Nat Commun· October 2021

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Leveraging vibration of effects analysis for robust discovery in observational biomedical data science.
Braden T Tierney, Elizabeth Anderson, Yingxuan Tan, Kajal Claypool, Sivateja Tangirala, Aleksandar D Kostic

PLoS Biol· September 2021

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Gene-level metagenomic architectures across diseases yield high-resolution microbiome diagnostic indicators.
Braden T Tierney, Yingxuan Tan, Aleksandar D Kostic, Chirag J Patel

Nat Commun· May 2021

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Circulating short and medium chain fatty acids are associated with normoalbuminuria in type 1 diabetes of long duration.
Salina Moon, John J Tsay, Heather Lampert, Zaipul I Md Dom, Aleksandar D Kostic

Sci Rep· April 2021

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Mechanisms of microbial-neuronal interactions in pain and nociception.
Valentina N Lagomarsino, Aleksandar D Kostic, Isaac M Chiu

Neurobiol Pain· December 2020

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A systematic machine learning and data type comparison yields metagenomic predictors of infant age, sex, breastfeeding, antibiotic usage, country of origin, and delivery type.
Alan Le Goallec, Braden T Tierney, Jacob M Luber, Evan M Cofer, Aleksandar D Kostic

PLoS Comput Biol· May 2020

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Reply to "Is physical performance (in mice) increased by Veillonella atypica or decreased by Lactobacillus bulgaricus?".
Aleksandar D Kostic

J Sport Health Sci· May 2020

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The Landscape of Genetic Content in the Gut and Oral Human Microbiome.
Braden T Tierney, Zhen Yang, Jacob M Luber, Marc Beaudin, Marsha C Wibowo, Aleksandar D Kostic

Cell Host Microbe· August 2019

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Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences.
Himel Mallick, Eric A Franzosa, Lauren J Mclver, Soumya Banerjee, Alexandra Sirota-Madi, Aleksandar D Kostic

Nat Commun· July 2019

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