Publications by authors named "Alessio Valentini"

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A Generalized Framework for Developing Dihedral Torsion Energy Terms in Nucleic Acids Force Fields.
Chungwen Liang, David Pekker, Alessio Valentini, Swagatam Mukhopadhyay

J Chem Theory Comput· August 2025

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Evaluation of Single Nucleotide Polymorphisms (SNPs) Associated with Genetic Resistance to Bovine Paratuberculosis in Beef Cattle, an Italian Native Breed.
Piera Mazzone, Antonella Di Paolo, Linda Petrucci, Martina Torricelli, Sara Corneli, Alessio Valentini

Animals (Basel)· February 2023

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InteraChem: Exploring Excited States in Virtual Reality with Interactive Molecular Dynamics.
Yuanheng Wang, Stefan Seritan, Dean Lahana, Jason E Ford, Alessio Valentini

J Chem Theory Comput· June 2022

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Voice-controlled quantum chemistry.
Umberto Raucci, Alessio Valentini, Elisa Pieri, Hayley Weir, Stefan Seritan

Nat Comput Sci· January 2021

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Selective bond formation triggered by short optical pulses: quantum dynamics of a four-center ring closure.
Alessio Valentini, Stephan van den Wildenberg, F Remacle

Phys Chem Chem Phys· October 2020

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Genome-Wide DNA Methylation and Gene Expression Profiles in Cows Subjected to Different Stress Level as Assessed by Cortisol in Milk.
Marcello Del Corvo, Silvia Bongiorni, Bruno Stefanon, Sandy Sgorlon, Alessio Valentini

Genes (Basel)· July 2020

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Modern quantum chemistry with [Open]Molcas.
Francesco Aquilante, Jochen Autschbach, Alberto Baiardi, Stefano Battaglia, Veniamin A Borin, Alessio Valentini

J Chem Phys· June 2020

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Gallop Racing Shifts Mature mRNA towards Introns: Does Exercise-Induced Stress Enhance Genome Plasticity?
Katia Cappelli, Samanta Mecocci, Silvia Gioiosa, Andrea Giontella, Maurizio Silvestrelli, Alessio Valentini

Genes (Basel)· April 2020

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Web-ARM: A Web-Based Interface for the Automatic Construction of QM/MM Models of Rhodopsins.
Laura Pedraza-González, María Del Carmen Marín, Alejandro N Jorge, Tyler D Ruck, Xuchun Yang, Alessio Valentini

J Chem Inf Model· March 2020

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Was the Cinta Senese Pig Already a Luxury Food in the Late Middle Ages? Ancient DNA and Archaeozoological Evidence from Central Italy.
Federica Gabbianelli, Francesca Alhaique, Giuseppe Romagnoli, Luca Brancazi, Lavinia Piermartini, Alessio Valentini

Genes (Basel)· January 2020

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OpenMolcas: From Source Code to Insight.
Ignacio Fdez Galván, Morgane Vacher, Ali Alavi, Celestino Angeli, Francesco Aquilante, Alessio Valentini

J Chem Theory Comput· November 2019

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Fluorescence Enhancement of a Microbial Rhodopsin via Electronic Reprogramming.
María Del Carmen Marín, Damianos Agathangelou, Yoelvis Orozco-Gonzalez, Alessio Valentini, Yoshitaka Kato

J Am Chem Soc· January 2019

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New Insights on Water Buffalo Genomic Diversity and Post-Domestication Migration Routes From Medium Density SNP Chip Data.
Licia Colli, Marco Milanesi, Elia Vajana, Daniela Iamartino, Lorenzo Bomba, Alessio Valentini

Front Genet· March 2018

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Genome assembly and transcriptome resource for river buffalo, Bubalus bubalis (2n = 50).
John L Williams, Daniela Iamartino, Kim D Pruitt, Tad Sonstegard, Timothy P L Smith, Alessio Valentini

Gigascience· October 2017

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How Do Methyl Groups Enhance the Triplet Chemiexcitation Yield of Dioxetane?
Morgane Vacher, Pooria Farahani, Alessio Valentini, Luis Manuel Frutos, Hans O Karlsson

J Phys Chem Lett· August 2017

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De novo assembly, functional annotation, and analysis of the giant reed ( L.) leaf transcriptome provide tools for the development of a biofuel feedstock.
Chiara Evangelistella, Alessio Valentini, Riccardo Ludovisi, Andrea Firrincieli, Francesco Fabbrini

Biotechnol Biofuels· May 2017

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Optomechanical Control of Quantum Yield in Trans-Cis Ultrafast Photoisomerization of a Retinal Chromophore Model.
Alessio Valentini, Daniel Rivero, Felipe Zapata, Cristina García-Iriepa, Marco Marazzi

Angew Chem Int Ed Engl· March 2017

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Toward Automatic Rhodopsin Modeling as a Tool for High-Throughput Computational Photobiology.
Federico Melaccio, María Del Carmen Marín, Alessio Valentini, Fabio Montisci, Silvia Rinaldi

J Chem Theory Comput· December 2016

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Use of canonical discriminant analysis to study signatures of selection in cattle.
Silvia Sorbolini, Giustino Gaspa, Roberto Steri, Corrado Dimauro, Massimo Cellesi, Alessio Valentini

Genet Sel Evol· August 2016

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Space and Time Evolution of the Electrostatic Potential During the Activation of a Visual Pigment.
Federico Melaccio, Nicolas Calimet, Igor Schapiro, Alessio Valentini, Marco Cecchini

J Phys Chem Lett· July 2016

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Molcas 8: New capabilities for multiconfigurational quantum chemical calculations across the periodic table.
Francesco Aquilante, Jochen Autschbach, Rebecca K Carlson, Liviu F Chibotaru, Mickaël G Delcey, Alessio Valentini

J Comput Chem· February 2016

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Probing the Photodynamics of Rhodopsins with Reduced Retinal Chromophores.
Madushanka Manathunga, Xuchun Yang, Hoi Ling Luk, Samer Gozem, Luis Manuel Frutos, Alessio Valentini

J Chem Theory Comput· February 2016

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Structural and Dynamic Characterization of the C313Y Mutation in Myostatin Dimeric Protein, Responsible for the "Double Muscle" Phenotype in Piedmontese Cattle.
Silvia Bongiorni, Alessio Valentini, Giovanni Chillemi

Front Genet· February 2016

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Mechanical Forces Alter Conical Intersections Topology.
Daniel Rivero, Alessio Valentini, Miguel Ángel Fernández-González, Felipe Zapata, Cristina García-Iriepa

J Chem Theory Comput· August 2015

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Directionality of Double-Bond Photoisomerization Dynamics Induced by a Single Stereogenic Center.
Gabriel Marchand, Julien Eng, Igor Schapiro, Alessio Valentini, Luis Manuel Frutos

J Phys Chem Lett· February 2015

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