Publications by authors named "Alex Abraham"

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An integrated view of the structure and function of the human 4D nucleome.
Job Dekker, Betul Akgol Oksuz, Yang Zhang, Ye Wang, Miriam K Minsk, Alex Abraham

Nature· December 2025

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Syntheses and structures of dinuclear zinc(II) acetate-bridged coordination compounds with the aromatic Schiff base chelators ,-dimethyl-2-[phen-yl(pyridin-2-yl)methyl-idene]hydrazine-1-carbothio-amide and -ethyl-2-[phen-yl(pyridin-2-yl)methyl-idene]hydrazine-1-carbo-thio-amide.
Christian S Parry, Alex R Abraham, Samuel K Kwofie, Michael D Wilson, Timothy R Ramadhar

Acta Crystallogr E Crystallogr Commun· July 2025

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A Multiscale Perspective on Chromatin Architecture through Polymer Physics.
Francesca Vercellone, Andrea M Chiariello, Andrea Esposito, Mattia Conte, Alex Abraham

Physiology (Bethesda)· May 2025

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Polymer models of chromatin organization in virally infected cells.
Andrea Fontana, Fabrizio Tafuri, Alex Abraham, Simona Bianco, Andrea Esposito

Biochem Soc Trans· February 2025

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Loss of structural specificity in 3D genome organization upon viral infection is predicted by polymer physics.
Andrea Fontana, Simona Bianco, Fabrizio Tafuri, Andrea Esposito, Alex Abraham

J Chem Phys· January 2025

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An integrated view of the structure and function of the human 4D nucleome.

bioRxiv· October 2024

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Polymer Physics Models Reveal Structural Folding Features of Single-Molecule Gene Chromatin Conformations.
Mattia Conte, Alex Abraham, Andrea Esposito, Liyan Yang, Johan H Gibcus

Int J Mol Sci· September 2024

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Polymer physics models reveal structural folding features of single-molecule gene chromatin conformations.
Mattia Conte, Alex Abraham, Andrea Esposito, Liyan Yang, Johan H Gibcus

bioRxiv· July 2024

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Multiscale modelling of chromatin 4D organization in SARS-CoV-2 infected cells.
Andrea M Chiariello, Alex Abraham, Simona Bianco, Andrea Esposito, Andrea Fontana

Nat Commun· May 2024

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Multiscale modelling of chromatin 4D organization in SARS-CoV-2 infected cells.
Andrea M Chiariello, Alex Abraham, Simona Bianco, Andrea Esposito, Francesca Vercellone

bioRxiv· July 2023

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Physics-Based Polymer Models to Probe Chromosome Structure in Single Molecules.
Mattia Conte, Andrea M Chiariello, Simona Bianco, Andrea Esposito, Alex Abraham

Methods Mol Biol· May 2023

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Attention to Detail: The Effect of Fluoroscopic Parallax on Limb Alignment Assessment During Corrective Osteotomy.
Matthew Weldon, Abraham Arenas, Alex Abraham, Layla A Haidar, Ryan J Warth

J Am Acad Orthop Surg Glob Res Rev· February 2023

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Unveiling the Machinery behind Chromosome Folding by Polymer Physics Modeling.
Mattia Conte, Andrea Esposito, Francesca Vercellone, Alex Abraham, Simona Bianco

Int J Mol Sci· February 2023

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Loop-extrusion and polymer phase-separation can co-exist at the single-molecule level to shape chromatin folding.
Mattia Conte, Ehsan Irani, Andrea M Chiariello, Alex Abraham, Simona Bianco

Nat Commun· July 2022

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The Physics of DNA Folding: Polymer Models and Phase-Separation.
Andrea Esposito, Alex Abraham, Mattia Conte, Francesca Vercellone, Antonella Prisco

Polymers (Basel)· May 2022

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Physical mechanisms of chromatin spatial organization.
Andrea M Chiariello, Simona Bianco, Andrea Esposito, Luca Fiorillo, Mattia Conte, Alex Abraham

FEBS J· March 2022

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Polymer physics reveals a combinatorial code linking 3D chromatin architecture to 1D chromatin states.
Andrea Esposito, Simona Bianco, Andrea M Chiariello, Alex Abraham, Luca Fiorillo

Cell Rep· March 2022

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A Polymer Physics Model to Dissect Genome Organization in Healthy and Pathological Phenotypes.
Mattia Conte, Luca Fiorillo, Simona Bianco, Andrea M Chiariello, Andrea Esposito, Alex Abraham

Methods Mol Biol· January 2022

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Dynamic and equilibrium properties of finite-size polymer models of chromosome folding.
Mattia Conte, Luca Fiorillo, Carlo Annunziatella, Andrea Esposito, Francesco Musella, Alex Abraham

Phys Rev E· November 2021

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Publisher Correction: Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin.
Luca Fiorillo, Francesco Musella, Mattia Conte, Rieke Kempfer, Andrea M Chiariello, Alex Abraham

Nat Methods· October 2021

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Polymer models are a versatile tool to study chromatin 3D organization.
Andrea Esposito, Simona Bianco, Luca Fiorillo, Mattia Conte, Alex Abraham

Biochem Soc Trans· August 2021

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Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin.
Luca Fiorillo, Francesco Musella, Mattia Conte, Rieke Kempfer, Andrea M Chiariello, Alex Abraham

Nat Methods· May 2021

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Self assembled linear polymeric chains with tuneable semiflexibility using isotropic interactions.
Alex Abraham, Apratim Chatterji

J Chem Phys· April 2018

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Microarray analysis of cellular thermotolerance.
Josh T Beckham, Gerald J Wilmink, Susan R Opalenik, Mark A Mackanos, Alex A Abraham

Lasers Surg Med· December 2010

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