Publications by authors named "Alex Ignatchenko"

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MBDBMetrics: an online metrics tool to measure the impact of biological data resources.
Giuseppe Insana, Alex Ignatchenko, Maria Martin, Alex Bateman,

Bioinform Adv· December 2023

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Rhea, the reaction knowledgebase in 2022.
Parit Bansal, Anne Morgat, Kristian B Axelsen, Venkatesh Muthukrishnan, Elisabeth Coudert, Alex Ignatchenko

Nucleic Acids Res· January 2022

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A GO catalogue of human DNA-binding transcription factors.
Ruth C Lovering, Pascale Gaudet, Marcio L Acencio, Alex Ignatchenko, Arttu Jolma

Biochim Biophys Acta Gene Regul Mech· December 2021

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Updates in Rhea: SPARQLing biochemical reaction data.
Thierry Lombardot, Anne Morgat, Kristian B Axelsen, Lucila Aimo, Nevila Hyka-Nouspikel, Alex Ignatchenko

Nucleic Acids Res· January 2019

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Proteomic Profiling of Secreted Proteins, Exosomes, and Microvesicles in Cell Culture Conditioned Media.
Ankit Sinha, Simona Principe, Javier Alfaro, Alex Ignatchenko, Vladimir Ignatchenko

Methods Mol Biol· August 2018

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Integrated omic analysis of oropharyngeal carcinomas reveals human papillomavirus (HPV)-dependent regulation of the activator protein 1 (AP-1) pathway.
Lusia Sepiashvili, Daryl Waggott, Angela Hui, Wei Shi, Susie Su, Alex Ignatchenko, Vladimir Ignatchenko

Mol Cell Proteomics· December 2014

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Integrated omic analysis of lung cancer reveals metabolism proteome signatures with prognostic impact.
Lei Li, Yuhong Wei, Christine To, Chang-Qi Zhu, Jiefei Tong, Vladimir Ignatchenko, Alex Ignatchenko

Nat Commun· November 2014

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In-depth proteomic analyses of ovarian cancer cell line exosomes reveals differential enrichment of functional categories compared to the NCI 60 proteome.
Ankit Sinha, Vladimir Ignatchenko, Alex Ignatchenko, Salvador Mejia-Guerrero, Thomas Kislinger

Biochem Biophys Res Commun· March 2014

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Proteomic profiling of the planarian Schmidtea mediterranea and its mucous reveals similarities with human secretions and those predicted for parasitic flatworms.
Donald G Bocchinfuso, Paul Taylor, Eric Ross, Alex Ignatchenko, Vladimir Ignatchenko

Mol Cell Proteomics· September 2012

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Translational analysis of mouse and human placental protein and mRNA reveals distinct molecular pathologies in human preeclampsia.
Brian Cox, Parveen Sharma, Andreas I Evangelou, Kathie Whiteley, Vladimir Ignatchenko, Alex Ignatchenko

Mol Cell Proteomics· December 2011

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Identification of novel ryanodine receptor 1 (RyR1) protein interaction with calcium homeostasis endoplasmic reticulum protein (CHERP).
Timothy Ryan, Parveen Sharma, Alex Ignatchenko, David H MacLennan, Thomas Kislinger

J Biol Chem· May 2011

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In-depth proteomic analyses of direct expressed prostatic secretions.
Richard R Drake, Sarah Elschenbroich, Orlay Lopez-Perez, Yunee Kim, Vladimir Ignatchenko, Alex Ignatchenko

J Proteome Res· May 2010

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Comparative systems biology of human and mouse as a tool to guide the modeling of human placental pathology.
Brian Cox, Max Kotlyar, Andreas I Evangelou, Vladimir Ignatchenko, Alex Ignatchenko

Mol Syst Biol· September 2009

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Multidimensional protein identification technology analysis highlights mitoxantrone-induced expression modulations in the primary prostate cancer cell proteome.
Juliane Symes, Andreas Evangelou, Alex Ignatchenko, Neil Fleshner, Thomas Kislinger

Proteomics Clin Appl· March 2009

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Identification of pathways associated with invasive behavior by ovarian cancer cells using multidimensional protein identification technology (MudPIT).
Katharine L Sodek, Andreas I Evangelou, Alex Ignatchenko, Mahima Agochiya, Theodore J Brown

Mol Biosyst· July 2008

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A proteome resource of ovarian cancer ascites: integrated proteomic and bioinformatic analyses to identify putative biomarkers.
Limor Gortzak-Uzan, Alex Ignatchenko, Andreas I Evangelou, Mahima Agochiya, Kevin A Brown

J Proteome Res· January 2008

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