Publications by authors named "Alex M Valm"

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A framework of multi-view machine learning for biological spectral unmixing of fluorophores with overlapping excitation and emission spectra.
Ruogu Wang, Yunlong Feng, Alex M Valm

Brief Bioinform· November 2024

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A Framework of Multi-View Machine Learning for Biological Spectral Unmixing of Fluorophores with Overlapping Excitation and Emission Spectra.
Ruogu Wang, Yunlong Feng, Alex M Valm

bioRxiv· August 2024

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Epithelial-derived interleukin-23 promotes oral mucosal immunopathology.
Tae Sung Kim, Tomoko Ikeuchi, Vasileios Ionas Theofilou, Drake Winslow Williams, Teresa Greenwell-Wild, Alex M Valm

Immunity· April 2024

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A feedback loop between heterochromatin and the nucleopore complex controls germ-cell-to-oocyte transition during Drosophila oogenesis.
Kahini Sarkar, Noor M Kotb, Alex Lemus, Elliot T Martin, Alicia McCarthy, Alex M Valm

Dev Cell· November 2023

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In Vitro Dental Plaque Culture Model for Biofilm Structural Analyses.
Alex A Lemus, Alex M Valm

Curr Protoc· October 2023

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Unmixing biological fluorescence image data with sparse and low-rank Poisson regression.
Ruogu Wang, Alex A Lemus, Colin M Henneberry, Yiming Ying, Yunlong Feng, Alex M Valm

Bioinformatics· April 2023

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Gnotobiotic zebrafish microbiota display inter-individual variability affecting host physiology.
Emmanuel E Adade, Rebecca J Stevick, David Pérez-Pascual, Jean-Marc Ghigo, Alex M Valm

bioRxiv· February 2023

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Unmixing Biological Fluorescence Image Data with Sparse and Low-Rank Poisson Regression.
Ruogu Wang, Alex A Lemus, Colin M Henneberry, Yiming Ying, Yunlong Feng, Alex M Valm

bioRxiv· January 2023

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Spatial scale in analysis of the dental plaque microbiome.
Gary G Borisy, Alex M Valm

Periodontol 2000· June 2021

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Recent progress in analyzing the spatial structure of the human microbiome: distinguishing biogeography and architecture in the oral and gut communities.
Emmanuel E Adade, Khalid Al Lakhen, Alex A Lemus, Alex M Valm

Curr Opin Endocr Metab Res· June 2021

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Interactions between and in an Organotypic Oral Epithelial Model.
Akshaya Lakshmi Krishnamoorthy, Alex A Lemus, Adline Princy Solomon, Alex M Valm, Prasanna Neelakantan

Microorganisms· November 2020

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The Structure of Dental Plaque Microbial Communities in the Transition from Health to Dental Caries and Periodontal Disease.
Alex M Valm

J Mol Biol· July 2019

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Interacting organelles.
Sarah Cohen, Alex M Valm, Jennifer Lippincott-Schwartz

Curr Opin Cell Biol· August 2018

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Multispectral Live-Cell Imaging.
Sarah Cohen, Alex M Valm, Jennifer Lippincott-Schwartz

Curr Protoc Cell Biol· June 2018

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Membrane dynamics and organelle biogenesis-lipid pipelines and vesicular carriers.
Christopher J Stefan, William S Trimble, Sergio Grinstein, Guillaume Drin, Karin Reinisch, Alex M Valm

BMC Biol· October 2017

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Multiplexed Spectral Imaging of 120 Different Fluorescent Labels.
Alex M Valm, Rudolf Oldenbourg, Gary G Borisy

PLoS One· August 2017

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Applying systems-level spectral imaging and analysis to reveal the organelle interactome.
Alex M Valm, Sarah Cohen, Wesley R Legant, Justin Melunis, Uri Hershberg

Nature· June 2017

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CLASI-FISH: principles of combinatorial labeling and spectral imaging.
Alex M Valm, Jessica L Mark Welch, Gary G Borisy

Syst Appl Microbiol· December 2012

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Systems-level analysis of microbial community organization through combinatorial labeling and spectral imaging.
Alex M Valm, Jessica L Mark Welch, Christopher W Rieken, Yuko Hasegawa, Mitchell L Sogin

Proc Natl Acad Sci U S A· March 2011

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