Publications by authors named "Alexander Balaeff"

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Exploration of Cryptic Pockets Using Enhanced Sampling Along Normal Modes: A Case Study of KRAS .
Neha Vithani, She Zhang, Jeffrey P Thompson, Lara A Patel, Alex Demidov, Alexander Balaeff

J Chem Inf Model· November 2024

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Charge splitters and charge transport junctions based on guanine quadruplexes.
Ruojie Sha, Limin Xiang, Chaoren Liu, Alexander Balaeff, Yuqi Zhang

Nat Nanotechnol· April 2018

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Cations Modulate Actin Bundle Mechanics, Assembly Dynamics, and Structure.
Nicholas Castaneda, Tianyu Zheng, Hector J Rivera-Jacquez, Hyun-Ju Lee, Jaekyung Hyun, Alexander Balaeff

J Phys Chem B· April 2018

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Nonequilibrium Hybridization Enables Discrimination of a Point Mutation within 5-40 °C.
Maria Stancescu, Tatiana A Fedotova, Jef Hooyberghs, Alexander Balaeff, Dmitry M Kolpashchikov

J Am Chem Soc· October 2016

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Biological charge transfer via flickering resonance.
Yuqi Zhang, Chaoren Liu, Alexander Balaeff, Spiros S Skourtis, David N Beratan

Proc Natl Acad Sci U S A· July 2014

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Effect of backbone flexibility on charge transfer rates in peptide nucleic acid duplexes.
Emil Wierzbinski, Arnie de Leon, Xing Yin, Alexander Balaeff, Kathryn L Davis

J Am Chem Soc· June 2012

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B-DNA to zip-DNA: simulating a DNA transition to a novel structure with enhanced charge-transport characteristics.
Alexander Balaeff, Stephen L Craig, David N Beratan

J Phys Chem A· September 2011

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Nucleic Acid Charge Transfer: Black, White and Gray.
Ravindra Venkatramani, Shahar Keinan, Alexander Balaeff, David N Beratan

Coord Chem Rev· April 2011

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Evidence for a near-resonant charge transfer mechanism for double-stranded peptide nucleic acid.
Ravindra Venkatramani, Kathryn L Davis, Emil Wierzbinski, Silvia Bezer, Alexander Balaeff

J Am Chem Soc· January 2011

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Steering electrons on moving pathways.
David N Beratan, Spiros S Skourtis, Ilya A Balabin, Alexander Balaeff, Shahar Keinan

Acc Chem Res· October 2009

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Role of nucleobase energetics and nucleobase interactions in single-stranded peptide nucleic acid charge transfer.
Amit Paul, Silvia Bezer, Ravindra Venkatramani, Laura Kocsis, Emil Wierzbinski, Alexander Balaeff

J Am Chem Soc· May 2009

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Solution structure of a peptide nucleic acid duplex from NMR data: features and limitations.
Wei He, Elizabeth Hatcher, Alexander Balaeff, David N Beratan, Roberto R Gil

J Am Chem Soc· October 2008

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PNA versus DNA: effects of structural fluctuations on electronic structure and hole-transport mechanisms.
Elizabeth Hatcher, Alexander Balaeff, Shahar Keinan, Ravindra Venkatramani, David N Beratan

J Am Chem Soc· September 2008

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Modeling DNA loops using the theory of elasticity.
Alexander Balaeff, L Mahadevan, Klaus Schulten

Phys Rev E Stat Nonlin Soft Matter Phys· March 2006

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Structural dynamics of the lac repressor-DNA complex revealed by a multiscale simulation.
Elizabeth Villa, Alexander Balaeff, Klaus Schulten

Proc Natl Acad Sci U S A· May 2005

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Structural basis for cooperative DNA binding by CAP and lac repressor.
Alexander Balaeff, L Mahadevan, Klaus Schulten

Structure· January 2004

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