Publications by authors named "Alexandre Defelicibus"

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Regulators of homologous recombination deficiency identified by machine learning using somatic multi-omics data.
Renan Valieris, Lucas Rosa, Luan Martins, Alexandre Defelicibus, Dirce Maria Carraro

Life Sci Alliance· February 2026

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Endoscopic liquid biopsies of gastric fluid in a large human patient cohort reveal DNA content as a candidate tumor biomarker in gastric cancer.
Francine C Cadoná, Thais F Bartelli, Adriane G Pelosof, Claudia Z Sztokfisz, Adriana P Bueno, Alexandre Defelicibus

Elife· December 2025

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First Transcriptome Analysis of Hepatoblastoma in Brazil: Unraveling the Pivotal Role of Noncoding RNAs and Metabolic Pathways.
Talita Ferreira Marques Aguiar, Maria Prates Rivas, Edson Mario de Andrade Silva, Sara Ferreira Pires, Gustavo Dib Dangoni, Alexandre Defelicibus

Biochem Genet· June 2025

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Correction: First Transcriptome Analysis of Hepatoblastoma in Brazil: Unraveling the Pivotal Role of Noncoding RNAs and Metabolic Pathways.
Talita Ferreira Marques Aguiar, Maria Prates Rivas, Edson Mario de Andrade Silva, Sara Ferreira Pires, Gustavo Dib Dangoni, Alexandre Defelicibus

Biochem Genet· June 2025

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Weakly-supervised deep learning models enable HER2-low prediction from H &E stained slides.
Renan Valieris, Luan Martins, Alexandre Defelicibus, Adriana Passos Bueno, Cynthia Aparecida Bueno de Toledo Osorio

Breast Cancer Res· August 2024

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Tracking SARS-CoV-2 variants of concern in wastewater: an assessment of nine computational tools using simulated genomic data.
Steven G Sutcliffe, Susanne A Kraemer, Isaac Ellmen, Jennifer J Knapp, Alyssa K Overton, Alexandre Defelicibus

Microb Genom· May 2024

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Germline variants in early and late-onset Brazilian prostate cancer patients.
Karoline Brito Caetano Andrade Coelho, Jeremy A Squire, Kelly Gomes Duarte, Cláudia Tarcila Gomes Sares, Natalia Alonso Moreda, Alexandre Defelicibus

Urol Oncol· March 2024

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Relating mutational signature exposures to clinical data in cancers via signeR 2.0.
Rodrigo D Drummond, Alexandre Defelicibus, Mathilde Meyenberg, Renan Valieris, Emmanuel Dias-Neto

BMC Bioinformatics· November 2023

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Mature tertiary lymphoid structures are key niches of tumour-specific immune responses in pancreatic ductal adenocarcinomas.
Gabriela Sarti Kinker, Glauco Akelinghton Freire Vitiello, Ariane Barros Diniz, Mariela Pires Cabral-Piccin, Pedro Henrique Barbosa Pereira, Alexandre Defelicibus

Gut· October 2023

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Premature ovarian insufficiency is associated with global alterations in the regulatory landscape and gene expression in balanced X-autosome translocations.
Adriana Di-Battista, Bianca Pereira Favilla, Malú Zamariolli, Natália Nunes, Alexandre Defelicibus

Epigenetics Chromatin· May 2023

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A mixture model for determining SARS-Cov-2 variant composition in pooled samples.
Renan Valieris, Rodrigo D Drummond, Alexandre Defelicibus, Emmanuel Dias-Neto, Rafael A Rosales

Bioinformatics· March 2022

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Exome and Tissue-Associated Microbiota as Predictive Markers of Response to Neoadjuvant Treatment in Locally Advanced Rectal Cancer.
Isabella Kuniko T M Takenaka, Thais F Bartelli, Alexandre Defelicibus, Juan M Sendoya, Mariano Golubicki

Front Oncol· March 2022

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Evaluation of Bacteria and Fungi DNA Abundance in Human Tissues.
Gabriela E de Albuquerque, Bruno S Moda, Marianna S Serpa, Gabriela P Branco, Alexandre Defelicibus

Genes (Basel)· January 2022

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Latency-associated DNA methylation patterns among HIV-1 infected individuals with distinct disease progression courses or antiretroviral virologic response.
Nathalia Mantovani, Alexandre Defelicibus, Israel Tojal da Silva, Maira Ferreira Cicero, Luiz Claudio Santana

Sci Rep· November 2021

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Mutational Signatures Driven by Epigenetic Determinants Enable the Stratification of Patients with Gastric Cancer for Therapeutic Intervention.
Jaqueline Ramalho Buttura, Monize Nakamoto Provisor Santos, Renan Valieris, Rodrigo Duarte Drummond, Alexandre Defelicibus

Cancers (Basel)· January 2021

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An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12.
Chen Keasar, Liam J McGuffin, Björn Wallner, Gaurav Chopra, Badri Adhikari, Alexandre Defelicibus

Sci Rep· July 2018

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