Publications by authors named "Alexandre Fort"

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Functional annotation of human long noncoding RNAs via molecular phenotyping.
Jordan A Ramilowski, Chi Wai Yip, Saumya Agrawal, Jen-Chien Chang, Yari Ciani, Alexandre Fort

Genome Res· July 2020

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Nuclear AGO1 Regulates Gene Expression by Affecting Chromatin Architecture in Human Cells.
Muhammad Shuaib, Krishna Mohan Parsi, Manjula Thimma, Sabir Abdu Adroub, Hideya Kawaji, Alexandre Fort

Cell Syst· November 2019

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Deep Cap Analysis of Gene Expression (CAGE): Genome-Wide Identification of Promoters, Quantification of Their Activity, and Transcriptional Network Inference.
Alexandre Fort, Richard J Fish

Methods Mol Biol· February 2018

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The effect of genetic variation on promoter usage and enhancer activity.
Marco Garieri, Olivier Delaneau, Federico Santoni, Richard J Fish, David Mull, Alexandre Fort

Nat Commun· November 2017

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An integrated expression atlas of miRNAs and their promoters in human and mouse.
Derek de Rie, Imad Abugessaisa, Tanvir Alam, Erik Arner, Peter Arner, Alexandre Fort

Nat Biotechnol· September 2017

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MBV: a method to solve sample mislabeling and detect technical bias in large combined genotype and sequencing assay datasets.
Alexandre Fort, Nikolaos I Panousis, Marco Garieri, Stylianos E Antonarakis, Tuuli Lappalainen

Bioinformatics· June 2017

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A complete tool set for molecular QTL discovery and analysis.
Olivier Delaneau, Halit Ongen, Andrew A Brown, Alexandre Fort, Nikolaos I Panousis

Nat Commun· May 2017

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HSA21 Single-Minded 2 (Sim2) Binding Sites Co-Localize with Super-Enhancers and Pioneer Transcription Factors in Pluripotent Mouse ES Cells.
Audrey Letourneau, Gilda Cobellis, Alexandre Fort, Federico Santoni, Marco Garieri

PLoS One· April 2016

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Nuclear transcriptome profiling of induced pluripotent stem cells and embryonic stem cells identify non-coding loci resistant to reprogramming.
Alexandre Fort, Daisuke Yamada, Kosuke Hashimoto, Haruhiko Koseki, Piero Carninci

Cell Cycle· January 2016

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CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors.
Kosuke Hashimoto, Ana Maria Suzuki, Alexandre Dos Santos, Christophe Desterke, Agnese Collino, Alexandre Fort

Genome Res· December 2015

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Biased allelic expression in human primary fibroblast single cells.
Christelle Borel, Pedro G Ferreira, Federico Santoni, Olivier Delaneau, Alexandre Fort

Am J Hum Genet· January 2015

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Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance.
Alexandre Fort, Kosuke Hashimoto, Daisuke Yamada, Md Salimullah, Chaman A Keya

Nat Genet· June 2014

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Developmental expression and organisation of fibrinogen genes in the zebrafish.
Richard J Fish, Silja Vorjohann, Frédérique Béna, Alexandre Fort, Marguerite Neerman-Arbez

Thromb Haemost· January 2012

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Loss of Dicer in Sertoli cells has a major impact on the testicular proteome of mice.
Marilena D Papaioannou, Mélanie Lagarrigue, Charles E Vejnar, Antoine D Rolland, Françoise Kühne, Alexandre Fort

Mol Cell Proteomics· April 2011

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A novel frameshift mutation in FGA (c.1846 del A) leading to congenital afibrinogenemia in a consanguineous Syrian family.
Emmanuel Levrat, Imad Aboukhamis, Philippe de Moerloose, Jaafar Farho, Sahar Chamaa, Alexandre Fort

Blood Coagul Fibrinolysis· March 2011

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A liver enhancer in the fibrinogen gene cluster.
Alexandre Fort, Richard J Fish, Catia Attanasio, Roland Dosch, Axel Visel

Blood· January 2011

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Regulation of fibrinogen production by microRNAs.
Alexandre Fort, Christelle Borel, Eugenia Migliavacca, Stylianos E Antonarakis, Richard J Fish

Blood· October 2010

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