Publications by authors named "Alexis Dereeper"

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The fly route of extended-spectrum-β-lactamase-producing dissemination in a cattle farm: from the ecosystem to the molecular scale.
Alann Caderhoussin, David Couvin, Gaëlle Gruel, Isaure Quétel, Matthieu Pot, Alexis Dereeper

Front Antibiot· April 2024

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Complete Genome Sequencing of Three Clade-1 Xanthomonads Reveals Genetic Determinants for a Lateral Flagellin and the Biosynthesis of Coronatine-Like Molecules in .
Chloé Peduzzi, Angeliki Sagia, Daiva Burokienė, Ildikó Katalin Nagy, Marion Fischer-Le Saux, Alexis Dereeper

Phytopathology· July 2023

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Meiotic Behaviors of Allotetraploid Citrus Drive the Interspecific Recombination Landscape, the Genetic Structures, and Traits Inheritance in Tetrazyg Progenies Aiming to Select New Rootstocks.
Lény Calvez, Alexis Dereeper, Aude Perdereau, Pierre Mournet, Maëva Miranda

Plants (Basel)· April 2023

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genus pangenome reveals new structural and functional insights into the versatility of these free-living amoebae.
Alexis Dereeper, Nina Allouch, Vincent Guerlais, Maëlle Garnier, Laurence Ma

Front Microbiol· February 2023

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Limited Transmission of Klebsiella pneumoniae among Humans, Animals, and the Environment in a Caribbean Island, Guadeloupe (French West Indies).
Alexis Dereeper, Gaëlle Gruel, Matthieu Pot, David Couvin, Elodie Barbier

Microbiol Spectr· October 2022

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Emergence of a Novel Lineage and Wide Spread of a /IncHI2/ST1 Plasmid among Nosocomial in Guadeloupe.
Matthieu Pot, Yann Reynaud, David Couvin, Alexis Dereeper, Séverine Ferdinand

Antibiotics (Basel)· October 2022

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PanExplorer: a web-based tool for exploratory analysis and visualization of bacterial pan-genomes.
Alexis Dereeper, Marilyne Summo, Damien F Meyer

Bioinformatics· September 2022

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Clustered Regularly Interspaced Short Palindromic Repeats in -Witnesses to a Global Expansion of a Bacterial Pathogen over Time.
Ninon Bellanger, Alexis Dereeper, Ralf Koebnik

Microorganisms· August 2022

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getSequenceInfo: a suite of tools allowing to get genome sequence information from public repositories.
Vincent Moco, Damien Cazenave, Maëlle Garnier, Matthieu Pot, Isabel Marcelino, Alexis Dereeper

BMC Bioinformatics· July 2022

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KaruBioNet: a network and discussion group for a better collaboration and structuring of bioinformatics in Guadeloupe (French West Indies).
David Couvin, Alexis Dereeper, Damien F Meyer, Christophe Noroy, Stanie Gaete

Bioinform Adv· February 2022

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Shifting From Sectoral to Integrated Surveillance by Changing Collaborative Practices: Application to West Nile Virus Surveillance in a Small Island State of the Caribbean.
Mariana Geffroy, Nonito Pagès, David Chavernac, Alexis Dereeper, Lydéric Aubert

Front Public Health· July 2021

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Genetics of nodulation in Aeschynomene evenia uncovers mechanisms of the rhizobium-legume symbiosis.
Johan Quilbé, Léo Lamy, Laurent Brottier, Philippe Leleux, Joël Fardoux, Alexis Dereeper

Nat Commun· February 2021

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TAL Effector Repertoires of Strains of pv. in Commercial Cassava Crops Reveal High Diversity at the Country Scale.
Carlos A Zárate-Chaves, Daniela Osorio-Rodríguez, Rubén E Mora, Álvaro L Pérez-Quintero, Alexis Dereeper

Microorganisms· February 2021

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Analyses of the Root-Knot Nematode () Transcriptome during Host Infection Highlight Specific Gene Expression Profiling in Resistant Rice Plants.
Anne-Sophie Petitot, Alexis Dereeper, Corinne Da Silva, Julie Guy, Diana Fernandez

Pathogens· August 2020

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Corrigendum to: Rice Galaxy: an open resource for plant science.
Venice Juanillas, Alexis Dereeper, Nicolas Beaume, Gaetan Droc, Joshua Dizon

Gigascience· December 2019

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Development of the Automated Primer Design Workflow Uniqprimer and Diagnostic Primers for the Broad-Host-Range Plant Pathogen .
Shaista Karim, R Ryan McNally, Afnan S Nasaruddin, Alexis DeReeper, Ramil P Mauleon

Plant Dis· November 2019

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Genotyping by sequencing can reveal the complex mosaic genomes in gene pools resulting from reticulate evolution: a case study in diploid and polyploid citrus.
Dalel Ahmed, Aurore Comte, Franck Curk, Gilles Costantino, François Luro, Alexis Dereeper

Ann Bot· July 2019

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Rice Galaxy: an open resource for plant science.
Venice Juanillas, Alexis Dereeper, Nicolas Beaume, Gaetan Droc, Joshua Dizon

Gigascience· May 2019

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Transcriptome data from three endemic Myrtaceae species from New Caledonia displaying contrasting responses to myrtle rust ().
Julia Soewarto, Chantal Hamelin, Stéphanie Bocs, Pierre Mournet, Hélène Vignes, Alexis Dereeper

Data Brief· February 2019

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On the Close Relatedness of Two Rice-Parasitic Root-Knot Nematode Species and the Recent Expansion of in Southeast Asia.
Guillaume Besnard, Ngan Thi-Phan, Hai Ho-Bich, Alexis Dereeper, Hieu Trang Nguyen

Genes (Basel)· February 2019

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daTALbase: A Database for Genomic and Transcriptomic Data Related to TAL Effectors.
Alvaro L Pérez-Quintero, Léo Lamy, Carlos A Zarate, Sébastien Cunnac, Erin Doyle, Alexis Dereeper

Mol Plant Microbe Interact· April 2018

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Identification of a Hypervirulent Pathotype of Rice yellow mottle virus: A Threat to Genetic Resistance Deployment in West-Central Africa.
Eugénie Hébrard, Agnès Pinel-Galzi, Aderonke Oludare, Nils Poulicard, Jamel Aribi, Alexis Dereeper

Phytopathology· February 2018

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Allelic variation for broad-spectrum resistance and susceptibility to bacterial pathogens identified in a rice MAGIC population.
Ana M Bossa-Castro, Cheick Tekete, Chitra Raghavan, Emily E Delorean, Alexis Dereeper

Plant Biotechnol J· February 2018

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Transcriptomic and histological responses of African rice (Oryza glaberrima) to Meloidogyne graminicola provide new insights into root-knot nematode resistance in monocots.
Anne-Sophie Petitot, Tina Kyndt, Rana Haidar, Alexis Dereeper, Myriam Collin

Ann Bot· March 2017

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Erratum to: Gigwa-Genotype investigator for genome-wide analyses.
Guilhem Sempéré, Florian Philippe, Alexis Dereeper, Manuel Ruiz, Gautier Sarah

Gigascience· November 2016

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