Publications by authors named "Alexis Joly"

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Learning the syntax of plant assemblages.
César Leblanc, Pierre Bonnet, Maximilien Servajean, Wilfried Thuiller, Milan Chytrý, Alexis Joly

Nat Plants· October 2025

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From Presence-Only to Abundance Species Distribution Models Using Transfer Learning.
Benjamin Bourel, Alexis Joly, Maximilien Servajean, Simon Bettinger, José Antonio Sanabria-Fernández

Ecol Lett· July 2025

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Using reflectance spectra and Pl@ntNet to identify herbarium specimens: a case study with Lithocarpus.
Barbara M Neto-Bradley, Pierre Bonnet, Hervé Goëau, Alexis Joly, Jeannine Cavender-Bares

New Phytol· June 2025

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Fully automatic extraction of morphological traits from the web: Utopia or reality?
Diego Marcos, Robert van de Vlasakker, Ioannis N Athanasiadis, Pierre Bonnet, Hervé Goëau, Alexis Joly

Appl Plant Sci· June 2025

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Correction: Seatizen Atlas: a collaborative dataset of underwater and aerial marine imagery.
Matteo Contini, Victor Illien, Mohan Julien, Mervyn Ravitchandirane, Victor Russias, Alexis Joly

Sci Data· April 2025

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Seatizen Atlas: a collaborative dataset of underwater and aerial marine imagery.
Matteo Contini, Victor Illien, Mohan Julien, Mervyn Ravitchandirane, Victor Russias, Alexis Joly

Sci Data· January 2025

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Can we harmonize the monitoring of plants and pollinators?: Meeting report on the symposium 'New solutions to monitor plants, pollinators and their interactions in a changing world', held at Collège de France and Muséum national d'Histoire naturelle, Paris, France, 23-24 May 2024.
Emmanuelle Porcher, Pierre Bonnet, Christian Damgaard, Pieter De Frenne, Nicolas Deguines, Alexis Joly

New Phytol· October 2024

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Estimating Compositions and Nutritional Values of Seed Mixes Based on Vision Transformers.
Shamprikta Mehreen, Hervé Goëau, Pierre Bonnet, Sophie Chau, Julien Champ, Alexis Joly

Plant Phenomics· November 2023

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Envisaging a global infrastructure to exploit the potential of digitised collections.
Quentin Groom, Mathias Dillen, Wouter Addink, Arturo H H Ariño, Christian Bölling, Alexis A J Joly

Biodivers Data J· November 2023

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Dynamic Species Distribution Modeling Reveals the Pivotal Role of Human-Mediated Long-Distance Dispersal in Plant Invasion.
Christophe Botella, Pierre Bonnet, Cang Hui, Alexis Joly, David M Richardson

Biology (Basel)· August 2022

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Very High Resolution Species Distribution Modeling Based on Remote Sensing Imagery: How to Capture Fine-Grained and Large-Scale Vegetation Ecology With Convolutional Neural Networks?
Benjamin Deneu, Alexis Joly, Pierre Bonnet, Maximilien Servajean, François Munoz

Front Plant Sci· May 2022

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Deep Species Distribution Modeling From Sentinel-2 Image Time-Series: A Global Scale Analysis on the Orchid Family.
Joaquim Estopinan, Maximilien Servajean, Pierre Bonnet, François Munoz, Alexis Joly

Front Plant Sci· April 2022

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Can Artificial Intelligence Help in the Study of Vegetative Growth Patterns from Herbarium Collections? An Evaluation of the Tropical Flora of the French Guiana Forest.
Hervé Goëau, Titouan Lorieul, Patrick Heuret, Alexis Joly, Pierre Bonnet

Plants (Basel)· February 2022

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Machine Learning Undercounts Reproductive Organs on Herbarium Specimens but Accurately Derives Their Quantitative Phenological Status: A Case Study of .
Natalie L R Love, Pierre Bonnet, Hervé Goëau, Alexis Joly, Susan J Mazer

Plants (Basel)· November 2021

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Identifying gaps in the photographic record of the vascular plant flora of the Americas.
Nigel C A Pitman, Tomomi Suwa, Carmen Ulloa Ulloa, James Miller, James Solomon, Alexis Joly

Nat Plants· August 2021

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Convolutional neural networks improve species distribution modelling by capturing the spatial structure of the environment.
Benjamin Deneu, Maximilien Servajean, Pierre Bonnet, Christophe Botella, François Munoz, Alexis Joly

PLoS Comput Biol· April 2021

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Attention-Based Recurrent Neural Network for Plant Disease Classification.
Sue Han Lee, Hervé Goëau, Pierre Bonnet, Alexis Joly

Front Plant Sci· December 2020

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AI Naturalists Might Hold the Key to Unlocking Biodiversity Data in Social Media Imagery.
Tom A August, Oliver L Pescott, Alexis Joly, Pierre Bonnet

Patterns (N Y)· October 2020

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Bias in presence-only niche models related to sampling effort and species niches: Lessons for background point selection.
Christophe Botella, Alexis Joly, Pascal Monestiez, Pierre Bonnet, François Munoz

PLoS One· July 2020

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Machine Learning Using Digitized Herbarium Specimens to Advance Phenological Research.
Katelin D Pearson, Gil Nelson, Myla F J Aronson, Pierre Bonnet, Laura Brenskelle, Alexis Joly

Bioscience· July 2020

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Instance segmentation for the fine detection of crop and weed plants by precision agricultural robots.
Julien Champ, Adan Mora-Fallas, Hervé Goëau, Erick Mata-Montero, Pierre Bonnet, Alexis Joly

Appl Plant Sci· July 2020

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A New Method for Counting Reproductive Structures in Digitized Herbarium Specimens Using Mask R-CNN.
Charles C Davis, Julien Champ, Daniel S Park, Ian Breckheimer, Goia M Lyra, Alexis Joly

Front Plant Sci· July 2020

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A new fine-grained method for automated visual analysis of herbarium specimens: A case study for phenological data extraction.
Hervé Goëau, Adán Mora-Fallas, Julien Champ, Natalie L Rossington Love, Susan J Mazer, Alexis Joly

Appl Plant Sci· June 2020

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Toward a large-scale and deep phenological stage annotation of herbarium specimens: Case studies from temperate, tropical, and equatorial floras.
Titouan Lorieul, Katelin D Pearson, Elizabeth R Ellwood, Hervé Goëau, Jean-Francois Molino, Alexis Joly

Appl Plant Sci· March 2019

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Species distribution modeling based on the automated identification of citizen observations.
Christophe Botella, Alexis Joly, Pierre Bonnet, Pascal Monestiez, François Munoz

Appl Plant Sci· February 2018

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