Publications by authors named "Alison Berry"

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Host-dependent specialized metabolism of nitrogen export in actinorhizal nodules induced by diazotrophic Actinomycetota Frankia cluster-2.
Fede Berckx, Thanh Van Nguyen, Rolf Hilker, Daniel Wibberg, Kai Battenberg, Alison Berry

J Exp Bot· February 2025

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A root nodule microbiome sequencing data set from red alder (Alnus rubra Bong.).
Callum J Bell, Johnny A Sena, Diego A Fajardo, Evan M Lavelle, Michael A Costa, Alison M Berry

Sci Data· December 2024

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Comparative phylogenomics and phylotranscriptomics provide insights into the genetic complexity of nitrogen-fixing root-nodule symbiosis.
Yu Zhang, Yuan Fu, Wenfei Xian, Xiuli Li, Yong Feng, Alison M Berry

Plant Commun· January 2024

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Contiguous Genome Sequence of sp. Strain ArI3, Isolated from Root Nodules of Alnus rubra Bong.
Callum J Bell, Johnny A Sena, Isaac S Gifford, Alison M Berry

Microbiol Resour Announc· October 2021

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Omics of the early molecular dialogue between Frankia alni and Alnus glutinosa and the cellulase synton.
Petar Pujic, Nicole Alloisio, Pascale Fournier, David Roche, Haitham Sghaier, Alison M Berry

Environ Microbiol· September 2019

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A Stable Genetic Transformation System and Implications of the Type IV Restriction System in the Nitrogen-Fixing Plant Endosymbiont ACN14a.
Isaac Gifford, Summer Vance, Giang Nguyen, Alison M Berry

Front Microbiol· September 2019

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Frankia-Enriched Metagenomes from the Earliest Diverging Symbiotic Frankia Cluster: They Come in Teams.
Thanh Van Nguyen, Daniel Wibberg, Theoden Vigil-Stenman, Fede Berckx, Kai Battenberg, Alison M Berry

Genome Biol Evol· August 2019

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Comparative Analysis of the Nodule Transcriptomes of (Rhamnaceae, Rosales) and (Datiscaceae, Cucurbitales).
Marco G Salgado, Robin van Velzen, Thanh Van Nguyen, Kai Battenberg, Alison M Berry

Front Plant Sci· November 2018

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Comparative Transcriptomic Analysis of Two Actinorhizal Plants and the Legume Supports the Homology of Root Nodule Symbioses and Is Congruent With a Two-Step Process of Evolution in the Nitrogen-Fixing Clade of Angiosperms.
Kai Battenberg, Daniel Potter, Christine A Tabuloc, Joanna C Chiu, Alison M Berry

Front Plant Sci· October 2018

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Distinctive Patterns of Flavonoid Biosynthesis in Roots and Nodules of and Revealed by Metabolomic and Gene Expression Profiles.
Isaac Gifford, Kai Battenberg, Arpana Vaniya, Alex Wilson, Li Tian, Alison M Berry

Front Plant Sci· October 2018

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Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota.
Allen Van Deynze, Pablo Zamora, Pierre-Marc Delaux, Cristobal Heitmann, Dhileepkumar Jayaraman, Alison M Berry

PLoS Biol· August 2018

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Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis.
Maximilian Griesmann, Yue Chang, Xin Liu, Yue Song, Georg Haberer, Alison M Berry

Science· July 2018

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Proposal of 'Candidatus Frankia californiensis', the uncultured symbiont in nitrogen-fixing root nodules of a phylogenetically broad group of hosts endemic to western North America.
Philippe Normand, Thanh Van Nguyen, Kai Battenberg, Alison M Berry, Brian Vanden Heuvel

Int J Syst Evol Microbiol· October 2017

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OrthoReD: a rapid and accurate orthology prediction tool with low computational requirement.
Kai Battenberg, Ernest K Lee, Joanna C Chiu, Alison M Berry, Daniel Potter

BMC Bioinformatics· June 2017

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The Influence of the Host Plant Is the Major Ecological Determinant of the Presence of Nitrogen-Fixing Root Nodule Symbiont Cluster II Frankia Species in Soil.
Kai Battenberg, Jannah A Wren, Janell Hillman, Joseph Edwards, Liujing Huang, Alison M Berry

Appl Environ Microbiol· January 2017

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An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH.
Thanh Van Nguyen, Daniel Wibberg, Kai Battenberg, Jochen Blom, Brian Vanden Heuvel, Alison M Berry

BMC Genomics· October 2016

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Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant.
Tomas Persson, Kai Battenberg, Irina V Demina, Theoden Vigil-Stenman, Brian Vanden Heuvel, Alison M Berry

PLoS One· April 2016

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Utility of peripheral intravenous cannulae inserted in one tertiary referral emergency department: A medical record audit.
Margaret Fry, Bernadine Romero, Alison Berry

Australas Emerg Nurs J· February 2016

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Phylogeny of the class Actinobacteria revisited in the light of complete genomes. The orders 'Frankiales' and Micrococcales should be split into coherent entities: proposal of Frankiales ord. nov., Geodermatophilales ord. nov., Acidothermales ord. nov. and Nakamurellales ord. nov.
Arnab Sen, Vincent Daubin, Danis Abrouk, Isaac Gifford, Alison M Berry

Int J Syst Evol Microbiol· November 2014

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Genome sequence of "Candidatus Frankia datiscae" Dg1, the uncultured microsymbiont from nitrogen-fixing root nodules of the dicot Datisca glomerata.
Tomas Persson, David R Benson, Philippe Normand, Brian Vanden Heuvel, Petar Pujic, Alison M Berry

J Bacteriol· December 2011

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Actinorhizal plants.
Ana Ribeiro, Alison M Berry, Katharina Pawlowski, Patr Cia Santos

Funct Plant Biol· September 2011

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Progress on research on actinorhizal plants.
Katharina Pawlowski, Didier Bogusz, Ana Ribeiro, Alison M Berry

Funct Plant Biol· September 2011

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New perspectives on nodule nitrogen assimilation in actinorhizal symbioses.
Alison M Berry, Alberto Mendoza-Herrera, Ying-Yi Guo, Jennifer Hayashi, Tomas Persson

Funct Plant Biol· September 2011

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Effects of phenolic monomers on growth of Acidothermus cellulolyticus.
Lawrence D Joh, Farzaneh Rezaei, Ravi D Barabote, Juanito V Parales, Rebecca E Parales, Alison M Berry

Biotechnol Prog· June 2011

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Xyn10A, a thermostable endoxylanase from Acidothermus cellulolyticus 11B.
Ravi D Barabote, Juanito V Parales, Ying-Yi Guo, John M Labavitch, Rebecca E Parales, Alison M Berry

Appl Environ Microbiol· November 2010

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