Publications by authors named "Allen W Nicholson"

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Multivalent forms of the ribonuclease H1 hybrid binding domain are high-affinity binders of RNA-DNA hybrids.
Alex Stopar, Allen W Nicholson

FEBS Lett· February 2023

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Noncanonical DNA Cleavage by BamHI Endonuclease in Laterally Confined DNA Monolayers Is a Step Function of DNA Density and Sequence.
Abimbola F Adedeji Olulana, Dianne Choi, Vincent Inverso, Shiv K Redhu, Marco Vidonis, Allen W Nicholson

Molecules· August 2022

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Global and local mechanical properties control endonuclease reactivity of a DNA origami nanostructure.
Antonio Suma, Alex Stopar, Allen W Nicholson, Matteo Castronovo, Vincenzo Carnevale

Nucleic Acids Res· May 2020

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Physiology of biodeterioration on canvas paintings.
Fernando Poyatos, Fátima Morales, Allen W Nicholson, Antonio Giordano

J Cell Physiol· April 2018

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Mechanism of Ribonuclease III Catalytic Regulation by Serine Phosphorylation.
Swapna Gone, Mercedes Alfonso-Prieto, Samridhdi Paudyal, Allen W Nicholson

Sci Rep· May 2016

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Ribosome-Templated Azide-Alkyne Cycloadditions: Synthesis of Potent Macrolide Antibiotics by In Situ Click Chemistry.
Ian Glassford, Christiana N Teijaro, Samer S Daher, Amy Weil, Meagan C Small, Allen W Nicholson

J Am Chem Soc· March 2016

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Combined computational and experimental analysis of a complex of ribonuclease III and the regulatory macrodomain protein, YmdB.
Samridhdi Paudyal, Mercedes Alfonso-Prieto, Vincenzo Carnevale, Shiv K Redhu, Michael L Klein, Allen W Nicholson

Proteins· March 2015

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Ribonuclease III mechanisms of double-stranded RNA cleavage.
Allen W Nicholson

Wiley Interdiscip Rev RNA· July 2014

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Digital imprinting of RNA recognition and processing on a self-assembled nucleic acid matrix.
Shiv K Redhu, Matteo Castronovo, Allen W Nicholson

Sci Rep· February 2014

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Evidence for a dual functional role of a conserved histidine in RNA·DNA heteroduplex cleavage by human RNase H1.
Nageswara R Alla, Allen W Nicholson

FEBS J· December 2012

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Bacteriophage T7 protein kinase: Site of inhibitory autophosphorylation, and use of dephosphorylated enzyme for efficient modification of protein in vitro.
Swapna Gone, Allen W Nicholson

Protein Expr Purif· October 2012

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Dissecting human dicer: some assembly required.
Allen W Nicholson

J Mol Biol· September 2012

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Characterization of Aquifex aeolicus ribonuclease III and the reactivity epitopes of its pre-ribosomal RNA substrates.
Zhongjie Shi, Rhonda H Nicholson, Ritu Jaggi, Allen W Nicholson

Nucleic Acids Res· April 2011

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Energetically important C-H···F-C pseudohydrogen bonding in water: evidence and application to rational design of oligonucleotides with high binding affinity.
Maryam Yahyaee Anzahaee, Jonathan K Watts, Nageswara R Alla, Allen W Nicholson, Masad J Damha

J Am Chem Soc· February 2011

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Thermotoga maritima ribonuclease III. Characterization of thermostable biochemical behavior and analysis of conserved base pairs that function as reactivity epitopes for the Thermotoga 23S rRNA precursor.
Lilian Nathania, Allen W Nicholson

Biochemistry· August 2010

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New approaches to understanding double-stranded RNA processing by ribonuclease III purification and assays of homodimeric and heterodimeric forms of RNase III from bacterial extremophiles and mesophiles.
Wenzhao Meng, Rhonda H Nicholson, Lilian Nathania, Alexandre V Pertzev, Allen W Nicholson

Methods Enzymol· March 2009

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Heterodimer-based analysis of subunit and domain contributions to double-stranded RNA processing by Escherichia coli RNase III in vitro.
Wenzhao Meng, Allen W Nicholson

Biochem J· February 2008

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Characterization of RNA sequence determinants and antideterminants of processing reactivity for a minimal substrate of Escherichia coli ribonuclease III.
Alexandre V Pertzev, Allen W Nicholson

Nucleic Acids Res· August 2006

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Catalytic mechanism of Escherichia coli ribonuclease III: kinetic and inhibitor evidence for the involvement of two magnesium ions in RNA phosphodiester hydrolysis.
Weimei Sun, Alexandre Pertzev, Allen W Nicholson

Nucleic Acids Res· February 2005

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Mutational analysis of the nuclease domain of Escherichia coli ribonuclease III. Identification of conserved acidic residues that are important for catalytic function in vitro.
Weimei Sun, Gang Li, Allen W Nicholson

Biochemistry· October 2004

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Characterization of a chlorella virus PBCV-1 encoded ribonuclease III.
Yuanzheng Zhang, Irina Calin-Jageman, James R Gurnon, Tae-Jin Choi, Byron Adams, Allen W Nicholson

Virology· December 2003

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RNA structure-dependent uncoupling of substrate recognition and cleavage by Escherichia coli ribonuclease III.
Irina Calin-Jageman, Allen W Nicholson

Nucleic Acids Res· May 2003

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Mutational analysis of an RNA internal loop as a reactivity epitope for Escherichia coli ribonuclease III substrates.
Irina Calin-Jageman, Allen W Nicholson

Biochemistry· May 2003

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Mouse ribonuclease III. cDNA structure, expression analysis, and chromosomal location.
Kristine R Fortin, Rhonda H Nicholson, Allen W Nicholson

BMC Genomics· August 2002

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Molecular characterization of a mouse cDNA encoding Dicer, a ribonuclease III ortholog involved in RNA interference.
Rhonda H Nicholson, Allen W Nicholson

Mamm Genome· February 2002

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