Publications by authors named "Alpan Raval"

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Artificial Intelligence-augmented public health interventions in India.
Shekar Sivasubramanian, Alpan Raval

Health Aff Sch· May 2025

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Evaluation of individual and ensemble probabilistic forecasts of COVID-19 mortality in the United States.
Estee Y Cramer, Evan L Ray, Velma K Lopez, Johannes Bracher, Andrea Brennen, Alpan Raval

Proc Natl Acad Sci U S A· April 2022

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A genome wide dosage suppressor network reveals genomic robustness.
Biranchi Patra, Yoshiko Kon, Gitanjali Yadav, Anthony W Sevold, Jesse P Frumkin, Alpan Raval

Nucleic Acids Res· January 2017

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Assessment of the utility of contact-based restraints in accelerating the prediction of protein structure using molecular dynamics simulations.
Alpan Raval, Stefano Piana, Michael P Eastwood, David E Shaw

Protein Sci· January 2016

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Differential hepatic protein tyrosine nitration of mouse due to aging - effect on mitochondrial energy metabolism, quality control machinery of the endoplasmic reticulum and metabolism of drugs.
Adrienne Marshall, Reshma Lutfeali, Alpan Raval, Deb N Chakravarti, Bulbul Chakravarti

Biochem Biophys Res Commun· January 2013

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Refinement of protein structure homology models via long, all-atom molecular dynamics simulations.
Alpan Raval, Stefano Piana, Michael P Eastwood, Ron O Dror, David E Shaw

Proteins· August 2012

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Computational modeling in systems biology.
Ravishankar R Vallabhajosyula, Alpan Raval

Methods Mol Biol· December 2010

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Detection of genomic islands via segmental genome heterogeneity.
Aaron J Arvey, Rajeev K Azad, Alpan Raval, Jeffrey G Lawrence

Nucleic Acids Res· September 2009

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Identifying hubs in protein interaction networks.
Ravishankar R Vallabhajosyula, Deboki Chakravarti, Samina Lutfeali, Animesh Ray, Alpan Raval

PLoS One· July 2009

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Proteome profiling of aging in mouse models: differential expression of proteins involved in metabolism, transport, and stress response in kidney.
Bulbul Chakravarti, Beerelli Seshi, Wongrat Ratanaprayul, Neville Dalal, Lawrence Lin, Alpan Raval

Proteomics· February 2009

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Mining protein networks for synthetic genetic interactions.
Sri R Paladugu, Shan Zhao, Animesh Ray, Alpan Raval

BMC Bioinformatics· October 2008

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Proteomic profiling of aging in the mouse heart: Altered expression of mitochondrial proteins.
Bulbul Chakravarti, Melva Oseguera, Neville Dalal, Pamela Fathy, Buddhadeb Mallik, Alpan Raval

Arch Biochem Biophys· June 2008

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A highly uniform UV transillumination imaging system for quantitative analysis of nucleic acids and proteins.
Bulbul Chakravarti, Melissa Louie, Wongrat Ratanaprayul, Alpan Raval, Sean Gallagher

Proteomics· May 2008

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Molecular clock on a neutral network.
Alpan Raval

Phys Rev Lett· September 2007

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Evolution favors protein mutational robustness in sufficiently large populations.
Jesse D Bloom, Zhongyi Lu, David Chen, Alpan Raval, Ophelia S Venturelli

BMC Biol· July 2007

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Thermodynamics of neutral protein evolution.
Jesse D Bloom, Alpan Raval, Claus O Wilke

Genetics· January 2007

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A single determinant dominates the rate of yeast protein evolution.
D Allan Drummond, Alpan Raval, Claus O Wilke

Mol Biol Evol· February 2006

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PathSys: integrating molecular interaction graphs for systems biology.
Michael Baitaluk, Xufei Qian, Shubhada Godbole, Alpan Raval, Animesh Ray

BMC Bioinformatics· February 2006

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Predicting the tolerance of proteins to random amino acid substitution.
Claus O Wilke, Jesse D Bloom, D Allan Drummond, Alpan Raval

Biophys J· December 2005

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Some asymptotic properties of duplication graphs.
Alpan Raval

Phys Rev E Stat Nonlin Soft Matter Phys· December 2003

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