Publications by authors named "Amanda Lohan"

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Functional characterization of the Mycobacterium abscessus genome coupled with condition specific transcriptomics reveals conserved molecular strategies for host adaptation and persistence.
Aleksandra A Miranda-CasoLuengo, Patrick M Staunton, Adam M Dinan, Amanda J Lohan, Brendan J Loftus

BMC Genomics· August 2016

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Variation in the Ovine Abomasal Lymph Node Transcriptome between Breeds Known to Differ in Resistance to the Gastrointestinal Nematode.
Albin M Ahmed, Barbara Good, James P Hanrahan, Paul McGettigan, John Browne, Amanda Lohan

PLoS One· March 2016

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Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle.
Stephen D E Park, David A Magee, Paul A McGettigan, Matthew D Teasdale, Ceiridwen J Edwards, Amanda J Lohan

Genome Biol· October 2015

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Delineating transcriptional networks of prognostic gene signatures refines treatment recommendations for lymph node-negative breast cancer patients.
Fiona Lanigan, Gerard L Brien, Yue Fan, Stephen F Madden, Emilia Jerman, Amanda J Lohan

FEBS J· September 2015

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Relaxed selection drives a noisy noncoding transcriptome in members of the Mycobacterium tuberculosis complex.
Adam M Dinan, Pin Tong, Amanda J Lohan, Kevin M Conlon, Aleksandra A Miranda-CasoLuengo

mBio· August 2014

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Identification and characterization of the genetic changes responsible for the characteristic smooth-to-rough morphotype alterations of clinically persistent Mycobacterium abscessus.
Alexandre Pawlik, Guillaume Garnier, Mickael Orgeur, Pin Tong, Amanda Lohan

Mol Microbiol· November 2013

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Control of reproductive floral organ identity specification in Arabidopsis by the C function regulator AGAMOUS.
Diarmuid S ÓMaoiléidigh, Samuel E Wuest, Liina Rae, Andrea Raganelli, Patrick T Ryan, Amanda J Lohan

Plant Cell· July 2013

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Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro.
Nicolas C Nalpas, Stephen D E Park, David A Magee, Maria Taraktsoglou, John A Browne, Amanda J Lohan

BMC Genomics· April 2013

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Mycobacterial lineages causing pulmonary and extrapulmonary tuberculosis, Ethiopia.
Rebuma Firdessa, Stefan Berg, Elena Hailu, Esther Schelling, Balako Gumi, Amanda J Lohan

Emerg Infect Dis· March 2013

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Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling.
Michael Clarke, Amanda J Lohan, Bernard Liu, Ilias Lagkouvardos, Scott Roy

Genome Biol· February 2013

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Polycomb PHF19 binds H3K36me3 and recruits PRC2 and demethylase NO66 to embryonic stem cell genes during differentiation.
Gerard L Brien, Guillermo Gambero, David J O'Connell, Emilia Jerman, Siobhán A Turner, Amanda J Lohan

Nat Struct Mol Biol· December 2012

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Methicillin resistance alters the biofilm phenotype and attenuates virulence in Staphylococcus aureus device-associated infections.
Clarissa Pozzi, Elaine M Waters, Justine K Rudkin, Carolyn R Schaeffer, Amanda J Lohan

PLoS Pathog· August 2012

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Molecular basis for the specification of floral organs by APETALA3 and PISTILLATA.
Samuel E Wuest, Diarmuid S O'Maoileidigh, Liina Rae, Kamila Kwasniewska, Andrea Raganelli, Amanda J Lohan

Proc Natl Acad Sci U S A· August 2012

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European 2--a clonal complex of Mycobacterium bovis dominant in the Iberian Peninsula.
Sabrina Rodriguez-Campos, Anita C Schürch, James Dale, Amanda J Lohan, Mónica V Cunha

Infect Genet Evol· June 2012

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The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium.
Carsten Kröger, Shane C Dillon, Andrew D S Cameron, Kai Papenfort, Sathesh K Sivasankaran, Amanda J Lohan

Proc Natl Acad Sci U S A· May 2012

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Sequencing illustrates the transcriptional response of Legionella pneumophila during infection and identifies seventy novel small non-coding RNAs.
Barbara A Weissenmayer, James G D Prendergast, Amanda J Lohan, Brendan J Loftus

PLoS One· March 2011

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Sequencing and analysis of an Irish human genome.
Pin Tong, James G D Prendergast, Amanda J Lohan, Susan M Farrington, Simon Cronin

Genome Biol· February 2011

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Characterization of the equine skeletal muscle transcriptome identifies novel functional responses to exercise training.
Beatrice A McGivney, Paul A McGettigan, John A Browne, Alexander C O Evans, Rita G Fonseca, Amanda Lohan

BMC Genomics· June 2010

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A complete mitochondrial genome sequence from a mesolithic wild aurochs (Bos primigenius).
Ceiridwen J Edwards, David A Magee, Stephen D E Park, Paul A McGettigan, Amanda J Lohan

PLoS One· February 2010

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Analysis of 5'- or 3'-terminal tRNA editing: mitochondrial 5' tRNA editing in Acanthamoeba castellanii as the exemplar.
Amanda J Lohan, Michael W Gray

Methods Enzymol· September 2007

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Methods for analysis of mitochondrial tRNA editing in Acanthamoeba castellanii.
Amanda J Lohan, Michael W Gray

Methods Mol Biol· July 2004

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tRNAHis maturation: an essential yeast protein catalyzes addition of a guanine nucleotide to the 5' end of tRNAHis.
Weifeng Gu, Jane E Jackman, Amanda J Lohan, Michael W Gray, Eric M Phizicky

Genes Dev· December 2003

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