Publications by authors named "Amanda Perofsky"

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Multiplex serology reveals age-specific immunodynamics of respiratory pathogens in the wake of the COVID-19 pandemic.
Samantha J Bents, Emily T Martin, Terry Stevens-Ayers, Claire Andrews, Amanda Adler, Amanda C Perofsky

Nat Commun· December 2025

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Characterizing the informativeness of pathogen genome sequence datasets about transmission between population groups.
Cécile Tran-Kiem, Amanda C Perofsky, Justin Lessler, Trevor Bedford

medRxiv· August 2025

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Improving mobility data for infectious disease research.
Natalya Kostandova, Ronan Corgel, Shweta Bansal, Sophie Bérubé, Eimear Cleary, Amanda C Perofsky

Nat Hum Behav· July 2025

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Epidemiology of Human Metapneumovirus Infection in a Community Setting, Seattle, Washington, USA.
Annalyse Elias-Warren, Julia C Bennett, Chidozie D Iwu, Lea M Starita, Jeremy Stone, Amanda C Perofsky

J Infect Dis· July 2025

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Scenario Projections of Respiratory Syncytial Virus Hospitalizations Averted Due to New Immunizations.
Chelsea L Hansen, Lawrence Lee, Samantha J Bents, Amanda C Perofsky, Kaiyuan Sun

JAMA Netw Open· June 2025

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Fine-scale patterns of SARS-CoV-2 spread from identical pathogen sequences.
Cécile Tran-Kiem, Miguel I Paredes, Amanda C Perofsky, Lauren A Frisbie, Hong Xie

Nature· April 2025

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Multiplex serology reveals age-specific immunodynamics of endemic respiratory pathogens in the wake of the COVID-19 pandemic.
Samantha J Bents, Emily T Martin, Terry Steven-Ayers, Claire Andrews, Amanda Adler, Amanda Perofsky

medRxiv· March 2025

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Fine-scale spatial and social patterns of SARS-CoV-2 transmission from identical pathogen sequences.
Cécile Tran-Kiem, Miguel I Paredes, Amanda C Perofsky, Lauren A Frisbie, Hong Xie

medRxiv· November 2024

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Antigenic drift and subtype interference shape A(H3N2) epidemic dynamics in the United States.
Amanda C Perofsky, John Huddleston, Chelsea L Hansen, John R Barnes, Thomas Rowe

Elife· September 2024

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Title evaluation of FluSight influenza forecasting in the 2021-22 and 2022-23 seasons with a new target laboratory-confirmed influenza hospitalizations.
Sarabeth M Mathis, Alexander E Webber, Tomás M León, Erin L Murray, Monica Sun, Amanda C Perofsky

Nat Commun· July 2024

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Antigenic drift and subtype interference shape A(H3N2) epidemic dynamics in the United States.
Amanda C Perofsky, John Huddleston, Chelsea Hansen, John R Barnes, Thomas Rowe

medRxiv· May 2024

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Impacts of human mobility on the citywide transmission dynamics of 18 respiratory viruses in pre- and post-COVID-19 pandemic years.
Amanda C Perofsky, Chelsea L Hansen, Roy Burstein, Shanda Boyle, Robin Prentice

Nat Commun· May 2024

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Local-scale phylodynamics reveal differential community impact of SARS-CoV-2 in a metropolitan US county.
Miguel I Paredes, Amanda C Perofsky, Lauren Frisbie, Louise H Moncla, Pavitra Roychoudhury

PLoS Pathog· March 2024

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Evaluation of FluSight influenza forecasting in the 2021-22 and 2022-23 seasons with a new target laboratory-confirmed influenza hospitalizations.
Sarabeth M Mathis, Alexander E Webber, Tomás M León, Erin L Murray, Monica Sun, Amanda C Perofsky

medRxiv· December 2023

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Trends in Risk Factors and Symptoms Associated With SARS-CoV-2 and Rhinovirus Test Positivity in King County, Washington, June 2020 to July 2022.
Chelsea Hansen, Amanda C Perofsky, Roy Burstein, Michael Famulare, Shanda Boyle

JAMA Netw Open· December 2022

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Local-Scale phylodynamics reveal differential community impact of SARS-CoV-2 in metropolitan US county.
Miguel I Paredes, Amanda C Perofsky, Lauren Frisbie, Louise H Moncla, Pavitra Roychoudhury

medRxiv· December 2022

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Direct and Indirect Effects of the Coronavirus Disease 2019 Pandemic on Private Healthcare Utilization in South Africa, March 2020-September 2021.
Amanda C Perofsky, Stefano Tempia, Jeremy Bingham, Caroline Maslo, Mande Toubkin

Clin Infect Dis· August 2022

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Social groups constrain the spatiotemporal dynamics of wild sifaka gut microbiomes.
Amanda C Perofsky, Lauren Ancel Meyers, Laura A Abondano, Anthony Di Fiore, Rebecca J Lewis

Mol Ecol· December 2021

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Tracing the Source of Influenza A Virus Zoonoses in Interconnected Circuits of Swine Exhibitions.
Dillon S McBride, Amanda C Perofsky, Jacqueline M Nolting, Martha I Nelson, Andrew S Bowman

J Infect Dis· August 2021

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A Heterogeneous Swine Show Circuit Drives Zoonotic Transmission of Influenza A Viruses in the United States.
Martha I Nelson, Amanda Perofsky, Dillon S McBride, Benjamin L Rambo-Martin, Malania M Wilson

J Virol· November 2020

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The challenges of vaccine strain selection.
Amanda C Perofsky, Martha I Nelson

Elife· October 2020

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Beyond clinical trials: Evolutionary and epidemiological considerations for development of a universal influenza vaccine.
Cécile Viboud, Katelyn Gostic, Martha I Nelson, Graeme E Price, Amanda Perofsky

PLoS Pathog· September 2020

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Terrestriality and bacterial transfer: a comparative study of gut microbiomes in sympatric Malagasy mammals.
Amanda C Perofsky, Rebecca J Lewis, Lauren Ancel Meyers

ISME J· January 2019

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Hierarchical social networks shape gut microbial composition in wild Verreaux's sifaka.
Amanda C Perofsky, Rebecca J Lewis, Laura A Abondano, Anthony Di Fiore, Lauren Ancel Meyers

Proc Biol Sci· December 2017

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Characterization of the Tree Holes Used by Lepilemur ruficaudatus in the Dry, Deciduous Forest of Kirindy Mitea National Park.
Elvis J Rakotomalala, Felix Rakotondraparany, Amanda C Perofsky, Rebecca J Lewis

Folia Primatol (Basel)· November 2017

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