Publications by authors named "Amirhossein Shamsaddini"

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Intrathecally expanded GZMK+/GZMH+ CD8 T cells targeting EBV antigens may reduce severity of Multiple Sclerosis.
Shinji Ashida, Peter Kosa, Francisco Otaizo-Carrasquero, Dan Sturdevant, Amirhossein Shamsaddini

medRxiv· August 2025

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Migration arrest and transendothelial trafficking of human pathogenic-like Th17 cells are mediated by differentially positioned chemokines.
Farhat Parween, Satya P Singh, Nausheen Kathuria, Hongwei H Zhang, Shinji Ashida, Amirhossein Shamsaddini

Nat Commun· February 2025

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Sex differences and individual variability in the captive Jamaican fruit bat (Artibeus jamaicensis) intestinal microbiome and metabolome.
Jade C Riopelle, Amirhossein Shamsaddini, Myndi G Holbrook, Eric Bohrnsen, Yue Zhang

Sci Rep· February 2024

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Genetically diverse mouse models of SARS-CoV-2 infection reproduce clinical variation in type I interferon and cytokine responses in COVID-19.
Shelly J Robertson, Olivia Bedard, Kristin L McNally, Carl Shaia, Chad S Clancy, Amirhossein Shamsaddini

Nat Commun· July 2023

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Human CCR6+ Th Cells Show Both an Extended Stable Gradient of Th17 Activity and Imprinted Plasticity.
Satya P Singh, Farhat Parween, Nithin Edara, Hongwei H Zhang, Jinguo Chen, Amirhossein Shamsaddini

J Immunol· June 2023

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Genetically diverse mouse models of SARS-CoV-2 infection reproduce clinical variation in type I interferon and cytokine responses in COVID-19.
Shelly Robertson, Olivia Bedard, Kristin McNally, Carl Shaia, Chad Clancy, Amirhossein Shamsaddini

bioRxiv· April 2023

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Longitudinal transkingdom gut microbial approach towards decompensation in outpatients with cirrhosis.
Jasmohan S Bajaj, Marcela Peña-Rodriguez, Alex La Reau, Wendy Phillips, Michael Fuchs, Amirhossein Shamsaddini

Gut· April 2023

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Chemokine positioning determines mutually exclusive roles for their receptors in extravasation of pathogenic human T cells.
Farhat Parween, Satya P Singh, Hongwei H Zhang, Nausheen Kathuria, Francisco A Otaizo-Carrasquero, Amirhossein Shamsaddini

bioRxiv· February 2023

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Human CCR6 Th cells show both an extended stable gradient of Th17 activity and imprinted plasticity.
Satya P Singh, Farhat Parween, Nithin Edara, Hongwei H Zhang, Jinguo Chen, Amirhossein Shamsaddini

bioRxiv· January 2023

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Reduced alcohol preference and intake after fecal transplant in patients with alcohol use disorder is transmissible to germ-free mice.
Jennifer T Wolstenholme, Justin M Saunders, Maren Smith, Jason D Kang, Phillip B Hylemon, Amirhossein Shamsaddini

Nat Commun· October 2022

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Interaction of Microbiome, Diet, and Hospitalizations Between Brazilian and American Patients With Cirrhosis.
Mario R Álvares-da-Silva, Claudia P Oliveira, Andrew Fagan, Larisse Longo, Rutiane U Thoen, Amirhossein Shamsaddini

Clin Gastroenterol Hepatol· April 2022

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Stool microbiota are superior to saliva in distinguishing cirrhosis and hepatic encephalopathy using machine learning.
Krishnakant Saboo, Nikita V Petrakov, Amirhossein Shamsaddini, Andrew Fagan, Edith A Gavis

J Hepatol· March 2022

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Multiple bacterial virulence factors focused on adherence and biofilm formation associate with outcomes in cirrhosis.
Jasmohan S Bajaj, Amirhossein Shamsaddini, Chathur Acharya, Andrew Fagan, Masoumeh Sikaroodi

Gut Microbes· January 2022

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Distinct gut microbial compositional and functional changes associated with impaired inhibitory control in patients with cirrhosis.
Jasmohan S Bajaj, Amirhossein Shamsaddini, Andrew Fagan, Sara McGeorge, Edith Gavis

Gut Microbes· December 2021

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Impact of Antibiotic Resistance Genes in Gut Microbiome of Patients With Cirrhosis.
Amirhossein Shamsaddini, Patrick M Gillevet, Chathur Acharya, Andrew Fagan, Edith Gavis

Gastroenterology· August 2021

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Interaction of bacterial metagenome and virome in patients with cirrhosis and hepatic encephalopathy.
Jasmohan S Bajaj, Masoumeh Sikaroodi, Amirhossein Shamsaddini, Zachariah Henseler, Tasha Santiago-Rodriguez

Gut· June 2021

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Gut Microbial Signature of Hepatocellular Cancer in Men With Cirrhosis.
Somaya Albhaisi, Amirhossein Shamsaddini, Andrew Fagan, Sara McGeorge, Masoumeh Sikaroodi

Liver Transpl· May 2021

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Fecal Microbiota Transplant in Cirrhosis Reduces Gut Microbial Antibiotic Resistance Genes: Analysis of Two Trials.
Jasmohan S Bajaj, Amirhossein Shamsaddini, Andrew Fagan, Richard K Sterling, Edith Gavis

Hepatol Commun· February 2021

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Sex is associated with differences in gut microbial composition and function in hepatic encephalopathy.
Krishnakant Saboo, Amirhossein Shamsaddini, Mihir V Iyer, Chang Hu, Andrew Fagan

J Hepatol· January 2021

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BiomMiner: An advanced exploratory microbiome analysis and visualization pipeline.
Amirhossein Shamsaddini, Kimia Dadkhah, Patrick M Gillevet

PLoS One· September 2020

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Adenoviral Infections in Singapore: Should New Antiviral Therapies and Vaccines Be Adopted?
Kristen K Coleman, Chui Ching Wong, Jayanthi Jayakumar, Tham T Nguyen, Abigail W L Wong, Amirhossein Shamsaddini

J Infect Dis· February 2020

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Comparative genomic analysis of two emergent human adenovirus type 14 respiratory pathogen isolates in China reveals similar yet divergent genomes.
Qiwei Zhang, Shuping Jing, Zetao Cheng, Zhiwu Yu, Shoaleh Dehghan, Amirhossein Shamsaddini

Emerg Microbes Infect· November 2017

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Human germline and pan-cancer variomes and their distinct functional profiles.
Yang Pan, Konstantinos Karagiannis, Haichen Zhang, Hayley Dingerdissen, Amirhossein Shamsaddini

Nucleic Acids Res· October 2014

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Census-based rapid and accurate metagenome taxonomic profiling.
Amirhossein Shamsaddini, Yang Pan, W Evan Johnson, Konstantinos Krampis, Mariya Shcheglovitova

BMC Genomics· October 2014

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A framework for organizing cancer-related variations from existing databases, publications and NGS data using a High-performance Integrated Virtual Environment (HIVE).
Tsung-Jung Wu, Amirhossein Shamsaddini, Yang Pan, Krista Smith, Daniel J Crichton

Database (Oxford)· August 2014

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