Publications by authors named "Amy D Willis"

Claim this Profile

Mentions over time

Mentions by platform

Video Views

8,222

Total Likes

643

Extended Reach

416,447

Social Features

129
G
Guidelines for preventing and reporting contamination in low-biomass microbiome studies.
Noah Fierer, Pok Man Leung, Rachael Lappan, Raphael Eisenhofer, Francesco Ricci, Amy D Willis

Nat Microbiol· July 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
E
Early-life and concurrent predictors of the healthy adolescent microbiome in a cohort study.
Hannah E Laue, Amy D Willis, Fang Wang, Melinda C MacDougall, Yingying Xu

Genome Med· May 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Microbes with higher metabolic independence are enriched in human gut microbiomes under stress.
Iva Veseli, Yiqun T Chen, Matthew S Schechter, Chiara Vanni, Emily C Fogarty, Amy D Willis

Elife· May 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Planning and describing a microbiome data analysis.
Amy D Willis, David S Clausen

Nat Microbiol· March 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
Distances Between Extension Spaces of Phylogenetic Trees.
Maria Alejandra Valdez Cabrera, Amy D Willis

IEEE Trans Comput Biol Bioinform· January 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
H
Host DNA depletion on frozen human respiratory samples enables successful metagenomic sequencing for microbiome studies.
Minsik Kim, Raymond C Parrish, Michael J Tisza, Viral S Shah, Thi Tran, Amy D Willis

Commun Biol· November 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Microbes with higher metabolic independence are enriched in human gut microbiomes under stress.
Iva Veseli, Yiqun T Chen, Matthew S Schechter, Chiara Vanni, Emily C Fogarty, Amy D Willis

bioRxiv· July 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Analyzing microbial evolution through gene and genome phylogenies.
Sarah Teichman, Michael D Lee, Amy D Willis

Biostatistics· July 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A cross-sectional comparison of gut metagenomes between dairy workers and community controls.
Pauline Trinh, Sarah Teichman, Marilyn C Roberts, Peter M Rabinowitz, Amy D Willis

BMC Genomics· July 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A distinct Fusobacterium nucleatum clade dominates the colorectal cancer niche.
Martha Zepeda-Rivera, Samuel S Minot, Heather Bouzek, Hanrui Wu, Aitor Blanco-Míguez, Amy D Willis

Nature· April 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A cryptic plasmid is among the most numerous genetic elements in the human gut.
Emily C Fogarty, Matthew S Schechter, Karen Lolans, Madeline L Sheahan, Iva Veseli, Amy D Willis

Cell· February 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
H
Host DNA depletion on frozen human respiratory samples enables successful metagenomic sequencing for microbiome studies.
Minsik Kim, Raymond C Parrish, Viral S Shah, Matthew Ross, Juwan Cormier, Amy D Willis

Res Sq· January 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
H
happi: a hierarchical approach to pangenomics inference.
Pauline Trinh, David S Clausen, Amy D Willis

Genome Biol· September 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Analyzing microbial evolution through gene and genome phylogenies.
Sarah Teichman, Michael D Lee, Amy D Willis

bioRxiv· August 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
Differences in gut metagenomes between dairy workers and community controls: a cross-sectional study.
Pauline Trinh, Marilyn C Roberts, Peter M Rabinowitz, Amy D Willis

bioRxiv· May 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A highly conserved and globally prevalent cryptic plasmid is among the most numerous mobile genetic elements in the human gut.
Emily C Fogarty, Matthew S Schechter, Karen Lolans, Madeline L Sheahan, Iva Veseli, Amy D Willis

bioRxiv· March 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Structure-informed microbial population genetics elucidate selective pressures that shape protein evolution.
Evan Kiefl, Ozcan C Esen, Samuel E Miller, Kourtney L Kroll, Amy D Willis

Sci Adv· February 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
E
Evaluating replicability in microbiome data.
David S Clausen, Amy D Willis

Biostatistics· October 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A multiview model for relative and absolute microbial abundances.
Brian D Williamson, James P Hughes, Amy D Willis

Biometrics· September 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Segment number threshold determines juvenile onset of germline cluster expansion in Platynereis dumerilii.
Emily Kuehn, David S Clausen, Ryan W Null, Bria M Metzger, Amy D Willis

J Exp Zool B Mol Dev Evol· June 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
G
Genomic and functional characterization of a mucosal symbiont involved in early-stage colorectal cancer.
Melissa C Kordahi, Ian B Stanaway, Marion Avril, Denise Chac, Marie-Pierre Blanc, Amy D Willis

Cell Host Microbe· October 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
G
geneshot: gene-level metagenomics identifies genome islands associated with immunotherapy response.
Samuel S Minot, Kevin C Barry, Caroline Kasman, Jonathan L Golob, Amy D Willis

Genome Biol· May 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
E
ESTIMATION OF CELL LINEAGE TREES BY MAXIMUM-LIKELIHOOD PHYLOGENETICS.
Jean Feng, William S Dewitt, Aaron McKenna, Noah Simon, Amy D Willis

Ann Appl Stat· March 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
Tuning parameter selection for a penalized estimator of species richness.
Alex Paynter, Amy D Willis

J Appl Stat· April 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis