Publications by authors named "Ananth Prakash"

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Expression Atlas in 2026: enabling FAIR and open expression data through community collaboration and integration.
Pedro Madrigal, Anil S Thanki, Silvie Fexova, Iris D Yu, Arsenios Chatzigeorgiou, Ananth Prakash

Nucleic Acids Res· December 2025

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Integrated View of Baseline Protein Expression in Human Tissues Using Public Data Independent Acquisition Data Sets.
Ananth Prakash, Andrew Collins, Liora Vilmovsky, Silvie Fexova, Andrew R Jones

J Proteome Res· February 2025

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The PRIDE database at 20 years: 2025 update.
Yasset Perez-Riverol, Chakradhar Bandla, Deepti J Kundu, Selvakumar Kamatchinathan, Jingwen Bai, Ananth Prakash

Nucleic Acids Res· January 2025

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REDIportal: toward an integrated view of the A-to-I editing.
Pietro D'Addabbo, Roni Cohen-Fultheim, Itamar Twersky, Adriano Fonzino, Domenico Alessandro Silvestris, Ananth Prakash

Nucleic Acids Res· January 2025

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Phosphorylation in the Proteome: A Meta-Analysis of Publicly Available Data Sets.
Oscar J M Camacho, Kerry A Ramsbottom, Ananth Prakash, Zhi Sun, Yasset Perez Riverol

J Proteome Res· December 2024

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Meta-Analysis of Rice Phosphoproteomics Data to Understand Variation in Cell Signaling Across the Rice Pan-Genome.
Kerry A Ramsbottom, Ananth Prakash, Yasset Perez-Riverol, Oscar Martin Camacho, Zhi Sun

J Proteome Res· July 2024

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Integrated Proteomics Analysis of Baseline Protein Expression in Pig Tissues.
Shengbo Wang, Andrew Collins, Ananth Prakash, Silvie Fexova, Irene Papatheodorou

J Proteome Res· June 2024

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Expression Atlas update: insights from sequencing data at both bulk and single cell level.
Nancy George, Silvie Fexova, Alfonso Munoz Fuentes, Pedro Madrigal, Yalan Bi, Ananth Prakash

Nucleic Acids Res· January 2024

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Integrated meta-analysis of colorectal cancer public proteomic datasets for biomarker discovery and validation.
Javier Robles, Ananth Prakash, Juan Antonio Vizcaíno, J Ignacio Casal

PLoS Comput Biol· January 2024

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A meta-analysis of rice phosphoproteomics data to understand variation in cell signalling across the rice pan-genome.
Kerry A Ramsbottom, Ananth Prakash, Yasset Perez Riverol, Oscar Martin Camacho, Zhi Sun

bioRxiv· November 2023

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Integrated View of Baseline Protein Expression in Human Tissues.
Ananth Prakash, David García-Seisdedos, Shengbo Wang, Deepti Jaiswal Kundu, Andrew Collins

J Proteome Res· March 2023

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Method for Independent Estimation of the False Localization Rate for Phosphoproteomics.
Kerry A Ramsbottom, Ananth Prakash, Yasset Perez Riverol, Oscar Martin Camacho, Maria-Jesus Martin

J Proteome Res· July 2022

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Implementing the reuse of public DIA proteomics datasets: from the PRIDE database to Expression Atlas.
Mathias Walzer, David García-Seisdedos, Ananth Prakash, Paul Brack, Peter Crowther

Sci Data· June 2022

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Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues.
Shengbo Wang, David García-Seisdedos, Ananth Prakash, Deepti Jaiswal Kundu, Andrew Collins

PLoS Comput Biol· June 2022

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The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences.
Yasset Perez-Riverol, Jingwen Bai, Chakradhar Bandla, David García-Seisdedos, Suresh Hewapathirana, Ananth Prakash

Nucleic Acids Res· January 2022

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Expression Atlas update: gene and protein expression in multiple species.
Pablo Moreno, Silvie Fexova, Nancy George, Jonathan R Manning, Zhichiao Miao, Ananth Prakash

Nucleic Acids Res· January 2022

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The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest.
Jakob Trendel, Thomas Schwarzl, Rastislav Horos, Ananth Prakash, Alex Bateman

Cell· January 2019

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The HMMER Web Server for Protein Sequence Similarity Search.
Ananth Prakash, Matt Jeffryes, Alex Bateman, Robert D Finn

Curr Protoc Bioinformatics· December 2017

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The yeast noncoding RNA interaction network.
Simona Panni, Ananth Prakash, Alex Bateman, Sandra Orchard

RNA· October 2017

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Eros is a novel transmembrane protein that controls the phagocyte respiratory burst and is essential for innate immunity.
David C Thomas, Simon Clare, John M Sowerby, Mercedes Pardo, Jatinder K Juss, Ananth Prakash

J Exp Med· April 2017

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Domain atrophy creates rare cases of functional partial protein domains.
Ananth Prakash, Alex Bateman

Genome Biol· April 2015

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An innate twist between Crick's wobble and Watson-Crick base pairs.
Prakash Ananth, Gunaseelan Goldsmith, Narayanarao Yathindra

RNA· August 2013

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Protein domain of unknown function 3233 is a translocation domain of autotransporter secretory mechanism in gamma proteobacteria.
Ananth Prakash, S Yogeeshwari, Sanchari Sircar, Shipra Agrawal

PLoS One· March 2012

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