Publications by authors named "Andre Forjaz"

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Selecting the optimal cell migration assay: fundamentals and practical guidelines.
Wenxuan Du, Praful R Nair, Andre Forjaz, Jude M Phillip, Pei-Hsun Wu

Nat Methods· December 2025

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Methods to analyze cell migration data: fundamentals and practical guidelines.
Pei-Hsun Wu, Jude M Phillip, Wenxuan Du, Andre Forjaz, Praful R Nair

Nat Methods· December 2025

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Spatial proteomics and transcriptomics reveal early immune cell organization in pancreatic intraepithelial neoplasia.
Melissa R Lyman, Jacob T Mitchell, Sidharth Raghavan, Luciane T Kagohara, Amanda L Huff, André Forjaz

JCI Insight· August 2025

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Human interpretable grammar encodes multicellular systems biology models to democratize virtual cell laboratories.
Jeanette A I Johnson, Daniel R Bergman, Heber L Rocha, David L Zhou, Eric Cramer, André Forjaz

Cell· August 2025

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3D map-guided modeling of functional endometrial tissue using multi-compartment assembloids.
Kehan A Ren, Victoria Duarte-Alvarado, Xin Di Zhou, Bryan Ho, André Forjaz

bioRxiv· August 2025

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InterpolAI: deep learning-based optical flow interpolation and restoration of biomedical images for improved 3D tissue mapping.
Saurabh Joshi, André Forjaz, Kyu Sang Han, Yu Shen, Vasco Queiroga

Nat Methods· July 2025

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Three-dimensional assessments are necessary to determine the true, spatially resolved composition of tissues.
André Forjaz, Eduarda Vaz, Valentina Matos Romero, Saurabh Joshi, Vasco Queiroga

Cell Rep Methods· June 2025

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PIVOT: an open-source tool for multi-omic spatial data registration.
André Forjaz, Valentina Matos Romero, Ian Reucroft, Margaret Eminizer, Donald Kramer

bioRxiv· June 2025

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Integration of nuclear morphology and 3D imaging to profile cellular neighborhoods.
André Forjaz, Donald Kramer, Yu Shen, Habin Bea, Margarita Tsapatsis

bioRxiv· April 2025

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Combined assembloid modeling and 3D whole-organ mapping captures the microanatomy and function of the human fallopian tube.
Ashleigh J Crawford, André Forjaz, Joanna Bons, Isha Bhorkar, Triya Roy

Sci Adv· September 2024

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3D histology reveals that immune response to pancreatic precancers is heterogeneous and depends on global pancreas structure.
Ashley L Kiemen, Cristina Almagro-Pérez, Valentina Matos, Andre Forjaz, Alicia M Braxton

bioRxiv· August 2024

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PanIN or IPMN? Redefining Lesion Size in 3 Dimensions.
Ashley L Kiemen, Lucie Dequiedt, Yu Shen, Yutong Zhu, Valentina Matos-Romero, André Forjaz

Am J Surg Pathol· July 2024

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High-motility pro-tumorigenic monocytes drive macrophage enrichment in the tumor microenvironment.
Wenxuan Du, Bryan Zhou, André Forjaz, Sarah M Shin, Fan Wu

bioRxiv· July 2024

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3D genomic mapping reveals multifocality of human pancreatic precancers.
Alicia M Braxton, Ashley L Kiemen, Mia P Grahn, André Forjaz, Jeeun Parksong

Nature· May 2024

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Three-dimensional reconstruction of fetal rhesus macaque kidneys at single-cell resolution reveals complex inter-relation of structures.
Lucie Dequiedt, André Forjaz, Jamie O Lo, Owen McCarty, Pei-Hsun Wu

bioRxiv· April 2024

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Three-dimensional assessments are necessary to determine the true, spatially-resolved composition of tissues.
André Forjaz, Eduarda Vaz, Valentina Matos Romero, Saurabh Joshi, Alicia M Braxton

bioRxiv· March 2024

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Engineering self-propelled tumor-infiltrating CAR T cells using synthetic velocity receptors.
Adrian C Johnston, Gretchen M Alicea, Cameron C Lee, Payal V Patel, Eban A Hanna, André Forjaz

bioRxiv· March 2024

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A disrupted compartment boundary underlies abnormal cardiac patterning and congenital heart defects.
Irfan S Kathiriya, Martin H Dominguez, Kavitha S Rao, Jonathon M Muncie-Vasic, W Patrick Devine, André Forjaz

bioRxiv· March 2024

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Generative interpolation and restoration of images using deep learning for improved 3D tissue mapping.
Saurabh Joshi, André Forjaz, Kyu Sang Han, Yu Shen, Vasco Queiroga

bioRxiv· March 2024

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Magnetic Resonance Imaging-Based Assessment of Pancreatic Fat Strongly Correlates With Histology-Based Assessment of Pancreas Composition.
Ashley L Kiemen, Mohamad Dbouk, Elizabeth Abou Diwan, André Forjaz, Lucie Dequiedt

Pancreas· February 2024

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Digitize your Biology! Modeling multicellular systems through interpretable cell behavior.
Jeanette A I Johnson, Genevieve L Stein-O'Brien, Max Booth, Randy Heiland, Furkan Kurtoglu, André Forjaz

bioRxiv· November 2023

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Precision-engineered biomimetics: the human fallopian tube.
Ashleigh J Crawford, André Forjaz, Isha Bhorkar, Triya Roy, David Schell

bioRxiv· June 2023

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Three-dimensional genomic mapping of human pancreatic tissue reveals striking multifocality and genetic heterogeneity in precancerous lesions.
Alicia M Braxton, Ashley L Kiemen, Mia P Grahn, André Forjaz, Jaanvi Mahesh Babu

bioRxiv· January 2023

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