Publications by authors named "Andrea D Tyler"

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Sporadic detection of vaccine-derived poliovirus type 2 using next-generation sequencing in Canadian wastewater in August of 2022.
Grace E Seo, Russell Mandes, Nathan D Wright, Justin P Hawkins, Anneliese Landgraff, Andrea D Tyler

Sci Rep· April 2025

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The Canadian VirusSeq Data Portal and Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology.
Erin E Gill, Baofeng Jia, Carmen Lia Murall, Raphaël Poujol, Muhammad Zohaib Anwar, Andrea D Tyler

Microb Genom· October 2024

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The Canadian VirusSeq Data Portal & Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology.
Erin E Gill, Baofeng Jia, Carmen Lia Murall, Raphaël Poujol, Muhammad Zohaib Anwar, Andrea D Tyler

ArXiv· May 2024

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Putting everything in its place: using the INSDC compliant Pathogen Data Object Model to better structure genomic data submitted for public health applications.
Ruth E Timme, Ilene Karsch-Mizrachi, Zahra Waheed, Masanori Arita, Duncan MacCannell, Andrea D Tyler

Microb Genom· December 2023

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Field-based detection of bacteria using nanopore sequencing: Method evaluation for biothreat detection in complex samples.
Andrea D Tyler, Jane McAllister, Helen Stapleton, Penny Gauci, Kym Antonation

PLoS One· November 2023

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Use of a taxon-specific reference database for accurate metagenomics-based pathogen detection of Listeria monocytogenes in turkey deli meat and spinach.
Jillian Rumore, Matthew Walker, Franco Pagotto, Jessica D Forbes, Christy-Lynn Peterson, Andrea D Tyler

BMC Genomics· June 2023

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Systematic evaluation of supervised machine learning for sample origin prediction using metagenomic sequencing data.
Julie Chih-Yu Chen, Andrea D Tyler

Biol Direct· December 2020

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Evaluation of Oxford Nanopore's MinION Sequencing Device for Microbial Whole Genome Sequencing Applications.
Andrea D Tyler, Laura Mataseje, Chantel J Urfano, Lisa Schmidt, Kym S Antonation

Sci Rep· July 2018

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Application of whole genome sequence analysis to the study of Mycobacterium tuberculosis in Nunavut, Canada.
Andrea D Tyler, Elaine Randell, Maureen Baikie, Kym Antonation, Debra Janella

PLoS One· October 2017

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Time-to-Detection of Inducible Macrolide Resistance in Mycobacterium abscessus Subspecies and Its Association with the Erm(41) Sequevar.
Sara Christianson, William Grierson, Daniel Kein, Andrea D Tyler, Joyce Wolfe

PLoS One· August 2017

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Custom database development and biomarker discovery methods for MALDI-TOF mass spectrometry-based identification of high-consequence bacterial pathogens.
Dobryan M Tracz, Andrea D Tyler, Ian Cunningham, Kym S Antonation, Cindi R Corbett

J Microbiol Methods· March 2017

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A Study of the Infant Nasal Microbiome Development over the First Year of Life and in Relation to Their Primary Adult Caregivers Using cpn60 Universal Target (UT) as a Phylogenetic Marker.
Shelley W Peterson, Natalie C Knox, George R Golding, Shaun D Tyler, Andrea D Tyler

PLoS One· August 2016

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Intraepithelial lymphocytosis is a frequent finding in biopsies from ileal pouch-anal anastomoses.
David F Schaeffer, Joanna C Walsh, Andrea D Tyler, Ofer Ben-Bassat, Mark S Silverberg

Hum Pathol· August 2016

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Comparison of Sample Preparation Methods Used for the Next-Generation Sequencing of Mycobacterium tuberculosis.
Andrea D Tyler, Sara Christianson, Natalie C Knox, Philip Mabon, Joyce Wolfe

PLoS One· July 2016

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Infliximab to Treat Refractory Inflammation After Pelvic Pouch Surgery for Ulcerative Colitis.
Orlaith B Kelly, Morgan Rosenberg, Andrea D Tyler, Joanne M Stempak, A Hillary Steinhart

J Crohns Colitis· April 2016

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Microbiome Heterogeneity Characterizing Intestinal Tissue and Inflammatory Bowel Disease Phenotype.
Andrea D Tyler, Richard Kirsch, Raquel Milgrom, Joanne M Stempak, Boyko Kabakchiev

Inflamm Bowel Dis· April 2016

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Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease.
Xochitl C Morgan, Boyko Kabakchiev, Levi Waldron, Andrea D Tyler, Timothy L Tickle

Genome Biol· April 2015

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Complex host genetics influence the microbiome in inflammatory bowel disease.
Dan Knights, Mark S Silverberg, Rinse K Weersma, Dirk Gevers, Gerard Dijkstra, Andrea D Tyler

Genome Med· January 2015

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Microbiome analysis - from technical advances to biological relevance.
Michelle I Smith, Williams Turpin, Andrea D Tyler, Mark S Silverberg, Kenneth Croitoru

F1000Prime Rep· September 2014

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Characterization of the gut-associated microbiome in inflammatory pouch complications following ileal pouch-anal anastomosis.
Andrea D Tyler, Natalie Knox, Boyko Kabakchiev, Raquel Milgrom, Richard Kirsch

PLoS One· July 2014

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Analyzing the human microbiome: a "how to" guide for physicians.
Andrea D Tyler, Michelle I Smith, Mark S Silverberg

Am J Gastroenterol· July 2014

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Ileal pouch symptoms do not correlate with inflammation of the pouch.
Ofer Ben-Bassat, Andrea D Tyler, Wei Xu, Richard Kirsch, David F Schaeffer

Clin Gastroenterol Hepatol· May 2014

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The NOD2insC polymorphism is associated with worse outcome following ileal pouch-anal anastomosis for ulcerative colitis.
Andrea D Tyler, Raquel Milgrom, Joanne M Stempak, Wei Xu, John Hunter Brumell

Gut· October 2013

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Antimicrobial antibodies are associated with a Crohn's disease-like phenotype after ileal pouch-anal anastomosis.
Andrea D Tyler, Raquel Milgrom, Wei Xu, Joanne M Stempak, A Hillary Steinhart

Clin Gastroenterol Hepatol· May 2012

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Celiac disease detected by pouch biopsy of a patient with ileal pouch-anal anastomosis.
Andrea D Tyler, Travis B Murdoch, Robert H Riddell, Zane Cohen, Mark S Silverberg

Am J Gastroenterol· July 2011

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