Publications by authors named "Andreas D Baxevanis"

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An updated and spatially validated somatic single-cell atlas of Hydractinia symbiolongicarpus.
Jingwei Song, Danielle de Jong, Justin Waletich, Andreas D Baxevanis, Christine E Schnitzler

BMC Genomics· December 2025

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The Genome Project Portal: multi-omic annotation and visualization of genomic datasets.
R Travis Moreland, Christine E Schnitzler, Suiyuan Zhang, Sumeeta Singh, Tyra G Wolfsberg, Andreas D Baxevanis

Bioinform Adv· November 2025

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A chromosome-level assembly and functional genomic resources for the model annelid .
Billie E Davies, Paul Gonzalez, Abhinav Sur, Jingcheng Wei, Tom Frankish, Andreas D Baxevanis

bioRxiv· November 2025

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In vivo profiling of the endothelium using 'AngioTag' zebrafish.
Mayumi F Miller, Leah J Greenspan, Derek E Gildea, Kathryn Monzo, Gennady Margolin, Andreas D Baxevanis

Angiogenesis· July 2025

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An updated and spatially validated somatic single-cell atlas of .
Jingwei Song, Danielle de Jong, Justin Waletich, Andreas D Baxevanis, Christine E Schnitzler

bioRxiv· June 2025

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Rapid speciation in the holopelagic ctenophore following glacial recession.
Remi N Ketchum, Edward G Smith, Leandra M Toledo, Whitney B Leach, Natalia Padillo-Anthemides, Andreas D Baxevanis

bioRxiv· November 2024

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An AI-generated proteome-scale dataset of predicted protein structures for the ctenophore Mnemiopsis leidyi.
R Travis Moreland, Suiyuan Zhang, Sofia N Barreira, Joseph F Ryan, Andreas D Baxevanis

Proteomics· August 2024

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Conserved Noncoding Elements Evolve Around the Same Genes Throughout Metazoan Evolution.
Paul Gonzalez, Quinn C Hauck, Andreas D Baxevanis

Genome Biol Evol· April 2024

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The genome of the colonial hydroid reveals that their stem cells use a toolkit of evolutionarily shared genes with all animals.
Christine E Schnitzler, E Sally Chang, Justin Waletich, Gonzalo Quiroga-Artigas, Wai Yee Wong, Andreas D Baxevanis

Genome Res· April 2024

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Randomly incorporated genomic N6-methyldeoxyadenosine delays zygotic transcription initiation in a cnidarian.
Febrimarsa, Sebastian G Gornik, Sofia N Barreira, Miguel Salinas-Saavedra, Christine E Schnitzler, Andreas D Baxevanis

EMBO J· August 2023

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The genome of the colonial hydroid reveals their stem cells utilize a toolkit of evolutionarily shared genes with all animals.
Christine E Schnitzler, E Sally Chang, Justin Waletich, Gonzalo Quiroga-Artigas, Wai Yee Wong, Andreas D Baxevanis

bioRxiv· August 2023

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Senescence-induced cellular reprogramming drives cnidarian whole-body regeneration.
Miguel Salinas-Saavedra, Febrimarsa, Gabriel Krasovec, Helen R Horkan, Andreas D Baxevanis

Cell Rep· July 2023

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Mapping the cortico-striatal transcriptome in attention deficit hyperactivity disorder.
Gustavo Sudre, Derek E Gildea, Gauri G Shastri, Wendy Sharp, Benjamin Jung, Andreas D Baxevanis

Mol Psychiatry· February 2023

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A chromosome-scale epigenetic map of the genome reveals conserved regulators of cell state.
Jack F Cazet, Stefan Siebert, Hannah Morris Little, Philip Bertemes, Abby S Primack, Andreas D Baxevanis

Genome Res· February 2023

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XY sex determination in a cnidarian.
Ruoxu Chen, Steven M Sanders, Zhiwei Ma, Justin Paschall, E Sally Chang, Andreas D Baxevanis

BMC Biol· February 2023

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A family of unusual immunoglobulin superfamily genes in an invertebrate histocompatibility complex.
Aidan L Huene, Steven M Sanders, Zhiwei Ma, Anh-Dao Nguyen, Sergey Koren, Andreas D Baxevanis

Proc Natl Acad Sci U S A· October 2022

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A cellular and molecular analysis of SoxB-driven neurogenesis in a cnidarian.
Eleni Chrysostomou, Hakima Flici, Sebastian G Gornik, Miguel Salinas-Saavedra, James M Gahan, Andreas D Baxevanis

Elife· May 2022

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AniProtDB: A Collection of Consistently Generated Metazoan Proteomes for Comparative Genomics Studies.
Sofia N Barreira, Anh-Dao Nguyen, Mark T Fredriksen, Tyra G Wolfsberg, R Travis Moreland, Andreas D Baxevanis

Mol Biol Evol· September 2021

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Transcription factor AP2 controls cnidarian germ cell induction.
Timothy Q DuBuc, Christine E Schnitzler, Eleni Chrysostomou, Emma T McMahon, Febrimarsa, Andreas D Baxevanis

Science· February 2020

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The Mnemiopsis Genome Project Portal: integrating new gene expression resources and improving data visualization.
R Travis Moreland, Anh-Dao Nguyen, Joseph F Ryan, Andreas D Baxevanis

Database (Oxford)· January 2020

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CRISPR/Cas9-mediated gene knockin in the hydroid Hydractinia symbiolongicarpus.
Steven M Sanders, Zhiwei Ma, Julia M Hughes, Brooke M Riscoe, Gregory A Gibson, Andreas D Baxevanis

BMC Genomics· September 2018

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The maternal-zygotic transition and zygotic activation of the Mnemiopsis leidyi genome occurs within the first three cleavage cycles.
Phillip L Davidson, Bernard J Koch, Christine E Schnitzler, Jonathan Q Henry, Mark Q Martindale, Andreas D Baxevanis

Mol Reprod Dev· November 2017

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Functional studies on the role of Notch signaling in Hydractinia development.
James M Gahan, Christine E Schnitzler, Timothy Q DuBuc, Liam B Doonan, Justyna Kanska, Andreas D Baxevanis

Dev Biol· August 2017

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BuddySuite: Command-Line Toolkits for Manipulating Sequences, Alignments, and Phylogenetic Trees.
Stephen R Bond, Karl E Keat, Sofia N Barreira, Andreas D Baxevanis

Mol Biol Evol· June 2017

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An Evolutionarily Conserved SoxB-Hdac2 Crosstalk Regulates Neurogenesis in a Cnidarian.
Hakima Flici, Christine E Schnitzler, R Cathriona Millane, Graham Govinden, Amy Houlihan, Andreas D Baxevanis

Cell Rep· February 2017

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