Publications by authors named "Andreas Pfenning"

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The cell-type-specific genetic architecture of chronic pain in brain and dorsal root ganglia.
Sylvanus Toikumo, Marc Parisien, Michael J Leone, Chaitanya Srinivasan, Huasheng Yu, Andreas R Pfenning

J Clin Invest· December 2025

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Insights into Convergent Evolution From Studying Amino Acid Patterns in Independent Lineages of Birds.
Chul Lee, Seoae Cho, Kyu-Won Kim, Dongahn Yoo, Matthew Davenport, Andreas R Pfenning

Genome Biol Evol· November 2025

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Evolution of Mammalian Regulatory Networks in the Brain.
Rajee Ganesan, Andreas R Pfenning

Annu Rev Anim Biosci· November 2025

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Challenges in Predicting Chromatin Accessibility Differences between Species.
Amy Stephen, Arian Raje, Heather H Sestili, Morgan E Wirthlin, Alyssa J Lawler, Andreas R Pfenning

bioRxiv· November 2025

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A Multimodal Atlas Reveals the Anatomical Distribution of Medium Spiny Neuron Subtypes and a Novel RGS6+ Population in the Primate Striatum.
Ghada Abdelhady, Olivia R Brull, Jing He, Meng K Lin, Adriana Galvan, Andreas R Pfenning

bioRxiv· November 2025

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Analytical fidelity calculations for photonic linear cluster state generation.
Rohit Prasad, Simon D Reiß, Giora Peniakov, Yorick Reum, Peter van Loock, Andreas Theo Pfenning

Nano Converg· September 2025

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A molecular and spinal circuit basis for the functional segregation of itch and pain.
Myung-Chul Noh, Kelly A Corrigan, Sean-Paul G Williams, Cedric Peirs, Michael J Leone, Andreas R Pfenning

bioRxiv· August 2025

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Wavevector-resolved polarization entanglement from radiative cascades.
Alessandro Laneve, Michele B Rota, Francesco Basso Basset, Mattia Beccaceci, Valerio Villari, Andreas Pfenning

Nat Commun· July 2025

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Etiological basis for chronic pain genetic variation in brain and dorsal root ganglia cell types.
Sylvanus Toikumo, Marc Parisien, Michael J Leone, Chaitanya Srinivasan, Huasheng Yu, Andreas R Pfenning

medRxiv· July 2025

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Deterministic quantum dot cavity placement using hyperspectral imaging with high spatial accuracy and precision.
Quirin Buchinger, Constantin Krause, Aileen Zhang, Giora Peniakov, Mohamed Helal, Andreas Theo Pfenning

Nano Converg· July 2025

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Context-dependent regulatory variants in Alzheimer's disease.
Ziheng Chen, Yaxuan Liu, Ashley R Brown, Heather H Sestili, Easwaran Ramamurthy, Andreas R Pfenning

bioRxiv· July 2025

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Combining Machine Learning and Multiplexed, Profiling to Engineer Cell Type and Behavioral Specificity.
Michael J Leone, Robert van de Weerd, Ashley R Brown, Myung-Chul Noh, BaDoi N Phan, Andreas R Pfenning

bioRxiv· June 2025

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Machine learning identification of enhancers in the rhesus macaque genome.
Jing He, BaDoi N Phan, Willa G Kerkhoff, Aydin Alikaya, Tao Hong, Andreas R Pfenning

Neuron· May 2025

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An systemic massively parallel platform for deciphering animal tissue-specific regulatory function.
Ashley R Brown, Grant A Fox, Irene M Kaplow, Alyssa J Lawler, BaDoi N Phan, Andreas R Pfenning

Front Genet· April 2025

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Small-cohort GWAS discovery with AI over massive functional genomics knowledge graph.
Kexin Huang, Tony Zeng, Soner Koc, Alexandra Pettet, Jingtian Zhou, Andreas Pfenning

medRxiv· December 2024

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RERconverge Expansion: Using Relative Evolutionary Rates to Study Complex Categorical Trait Evolution.
Ruby Redlich, Amanda Kowalczyk, Michael Tene, Heather H Sestili, Kathleen Foley, Andreas R Pfenning

Mol Biol Evol· November 2024

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Spatial, transcriptomic, and epigenomic analyses link dorsal horn neurons to chronic pain genetic predisposition.
Cynthia M Arokiaraj, Michael J Leone, Michael Kleyman, Alexander Chamessian, Myung-Chul Noh, Andreas R Pfenning

Cell Rep· November 2024

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AI-designed DNA sequences regulate cell-type-specific gene expression.
Andreas R Pfenning

Nature· October 2024

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Regression convolutional neural network models implicate peripheral immune regulatory variants in the predisposition to Alzheimer's disease.
Easwaran Ramamurthy, Snigdha Agarwal, Noelle Toong, Heather Sestili, Irene M Kaplow, Andreas R Pfenning

PLoS Comput Biol· August 2024

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Vocal learning-associated convergent evolution in mammalian proteins and regulatory elements.
Morgan E Wirthlin, Tobias A Schmid, Julie E Elie, Xiaomeng Zhang, Amanda Kowalczyk, Andreas R Pfenning, Andreas R Pfenning

Science· March 2024

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Spatial, transcriptomic and epigenomic analyses link dorsal horn neurons to chronic pain genetic predisposition.
Cynthia M Arokiaraj, Michael J Leone, Michael Kleyman, Alexander Chamessian, BaDoi N Phan, Andreas R Pfenning

bioRxiv· March 2024

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Loss of epigenetic information as a cause of mammalian aging.
Jae-Hyun Yang, Motoshi Hayano, Patrick T Griffin, João A Amorim, Michael S Bonkowski, Andreas R Pfenning

Cell· February 2024

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Single nuclei transcriptomics in human and non-human primate striatum in opioid use disorder.
BaDoi N Phan, Madelyn H Ray, Xiangning Xue, Chen Fu, Robert J Fenster, Andreas R Pfenning

Nat Commun· January 2024

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RERconverge Expansion: Using Relative Evolutionary Rates to Study Complex Categorical Trait Evolution.
Ruby Redlich, Amanda Kowalczyk, Michael Tene, Heather H Sestili, Kathleen Foley, Andreas Pfenning

bioRxiv· December 2023

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Psychiatric risk gene Transcription Factor 4 (TCF4) regulates the density and connectivity of distinct inhibitory interneuron subtypes.
Huei-Ying Chen, BaDoi N Phan, Gina Shim, Gregory R Hamersky, Norah Sadowski, Andreas R Pfenning

Mol Psychiatry· November 2023

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