Publications by authors named "Andrej Bugrim"

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Predict drug sensitivity of cancer cells with pathway activity inference.
Xuewei Wang, Zhifu Sun, Michael T Zimmermann, Andrej Bugrim, Jean-Pierre Kocher

BMC Med Genomics· January 2019

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Characteristics of genomic signatures derived using univariate methods and mechanistically anchored functional descriptors for predicting drug- and xenobiotic-induced nephrotoxicity.
Weiwei Shi, Andrej Bugrim, Yuri Nikolsky, Tatiana Nikolskya, Richard J Brennan

Toxicol Mech Methods· October 2012

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"Topological significance" analysis of gene expression and proteomic profiles from prostate cancer cells reveals key mechanisms of androgen response.
Adaikkalam Vellaichamy, Zoltán Dezso, Lellean JeBailey, Arul M Chinnaiyan, Arun Sreekumar, Andrej Bugrim

PLoS One· June 2010

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Bimodal gene expression patterns in breast cancer.
Marina Bessarabova, Eugene Kirillov, Weiwei Shi, Andrej Bugrim, Yuri Nikolsky

BMC Genomics· February 2010

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Identifying disease-specific genes based on their topological significance in protein networks.
Zoltán Dezso, Yuri Nikolsky, Tatiana Nikolskaya, Jeremy Miller, David Cherba, Andrej Bugrim

BMC Syst Biol· March 2009

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A comprehensive functional analysis of tissue specificity of human gene expression.
Zoltán Dezso, Yuri Nikolsky, Evgeny Sviridov, Weiwei Shi, Tatiana Serebriyskaya, Andrej Bugrim

BMC Biol· November 2008

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Identification of interspecies concordance of mechanisms of arsenic-induced bladder cancer.
Banalata Sen, Douglas C Wolf, Yaron Turpaz, Andrej Bugrim, Jacques Retief

Toxicol In Vitro· December 2007

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Signature pathways identified from gene expression profiles in the human uterine cervix before and after spontaneous term parturition.
Sonia S Hassan, Roberto Romero, Adi L Tarca, Sorin Draghici, Beth Pineles, Andrej Bugrim

Am J Obstet Gynecol· September 2007

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Pathway mapping tools for analysis of high content data.
Sean Ekins, Yuri Nikolsky, Andrej Bugrim, Eugene Kirillov, Tatiana Nikolskaya

Methods Mol Biol· November 2006

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A combined approach to drug metabolism and toxicity assessment.
Sean Ekins, Sergey Andreyev, Andy Ryabov, Eugene Kirillov, Eugene A Rakhmatulin, Andrej Bugrim

Drug Metab Dispos· March 2006

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Computational prediction of human drug metabolism.
Sean Ekins, Sergey Andreyev, Andy Ryabov, Eugene Kirillov, Eugene A Rakhmatulin, Andrej Bugrim

Expert Opin Drug Metab Toxicol· August 2005

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A novel method for generation of signature networks as biomarkers from complex high throughput data.
Yuri Nikolsky, Sean Ekins, Tatiana Nikolskaya, Andrej Bugrim

Toxicol Lett· July 2005

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Biological networks and analysis of experimental data in drug discovery.
Yuri Nikolsky, Tatiana Nikolskaya, Andrej Bugrim

Drug Discov Today· May 2005

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Early prediction of drug metabolism and toxicity: systems biology approach and modeling.
Andrej Bugrim, Tatiana Nikolskaya, Yuri Nikolsky

Drug Discov Today· February 2004

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Sperm initiate a Ca2+ wave in frog eggs that is more similar to Ca2+ waves initiated by IP3 than by Ca2+.
Andrej Bugrim, Ray Fontanilla, Bridget B Eutenier, Joel Keizer, Richard Nuccitelli

Biophys J· March 2003

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