Publications by authors named "Andrej Savol"

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Analytical validation (accuracy, reproducibility, limit of detection) and gene expression analysis of FoundationOneRNA assay for fusion detection in 189 clinical tumor specimens.
Daokun Sun, Richard S P Huang, Michelle Green, Chenming Cui, Saumya D Sisoudiya, Andrej Savol

PLoS One· September 2025

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Breadth versus depth: whole transcriptome sequencing has reduced sensitivity for detection of clinically relevant fusions compared to RNA comprehensive genomic profiling.
Rachel B Keller-Evans, Daniela Munafo, Tristen Ross, Sarah Rudawsky, Andrej Savol

Oncologist· December 2024

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Astrocytes in the Optic Nerve Are Heterogeneous in Their Reactivity to Glaucomatous Injury.
Ying Zhu, Rui Wang, Anthony C Pappas, Philip Seifert, Andrej Savol

Cells· August 2023

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IRF3 and type I interferons fuel a fatal response to myocardial infarction.
Kevin R King, Aaron D Aguirre, Yu-Xiang Ye, Yuan Sun, Jason D Roh, Andrej Savol

Nat Med· December 2017

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Genome-wide identification of autosomal genes with allelic imbalance of chromatin state.
Andrej J Savol, Peggy I Wang, Yesu Jeon, David Colognori, Eda Yildirim

PLoS One· October 2017

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Prolonged Mek1/2 suppression impairs the developmental potential of embryonic stem cells.
Jiho Choi, Aaron J Huebner, Kendell Clement, Ryan M Walsh, Andrej Savol

Nature· August 2017

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DUSP9 Modulates DNA Hypomethylation in Female Mouse Pluripotent Stem Cells.
Jiho Choi, Kendell Clement, Aaron J Huebner, Jamie Webster, Christopher M Rose, Andrej Savol

Cell Stem Cell· May 2017

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Macrophages Facilitate Electrical Conduction in the Heart.
Maarten Hulsmans, Sebastian Clauss, Ling Xiao, Aaron D Aguirre, Kevin R King, Andrej J Savol

Cell· April 2017

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Mutation of a nucleosome compaction region disrupts Polycomb-mediated axial patterning.
Mei Sheng Lau, Matthew G Schwartz, Sharmistha Kundu, Andrej J Savol, Peggy I Wang

Science· March 2017

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Survival in Quiescence Requires the Euchromatic Deployment of Clr4/SUV39H by Argonaute-Associated Small RNAs.
Richard I Joh, Jasbeer S Khanduja, Isabel A Calvo, Meeta Mistry, Christina M Palmieri, Andrej J Savol

Mol Cell· December 2016

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Approximating frustration scores in complex networks via perturbed Laplacian spectra.
Andrej J Savol, Chakra S Chennubhotla

Phys Rev E Stat Nonlin Soft Matter Phys· December 2015

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Quantifying the Sources of Kinetic Frustration in Folding Simulations of Small Proteins.
Andrej J Savol, Chakra S Chennubhotla

J Chem Theory Comput· August 2014

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Protein conformational populations and functionally relevant substates.
Arvind Ramanathan, Andrej Savol, Virginia Burger, Chakra S Chennubhotla, Pratul K Agarwal

Acc Chem Res· January 2014

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Quasi-anharmonic analysis reveals intermediate states in the nuclear co-activator receptor binding domain ensemble.
Virginia M Burger, Arvind Ramanathan, Andrej J Savol, Christopher B Stanley, Pratul K Agarwal

Pac Symp Biocomput· December 2013

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Modeling boundary conditions for balanced proliferation in metastatic latency.
Donald P Taylor, Jakob Z Wells, Andrej Savol, Chakra Chennubhotla, Alan Wells

Clin Cancer Res· March 2013

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Event detection and sub-state discovery from biomolecular simulations using higher-order statistics: application to enzyme adenylate kinase.
Arvind Ramanathan, Andrej J Savol, Pratul K Agarwal, Chakra S Chennubhotla

Proteins· November 2012

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QAARM: quasi-anharmonic autoregressive model reveals molecular recognition pathways in ubiquitin.
Andrej J Savol, Virginia M Burger, Pratul K Agarwal, Arvind Ramanathan, Chakra S Chennubhotla

Bioinformatics· July 2011

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Discovering conformational sub-states relevant to protein function.
Arvind Ramanathan, Andrej J Savol, Christopher J Langmead, Pratul K Agarwal, Chakra S Chennubhotla

PLoS One· January 2011

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