Publications by authors named "Andreu Alibes"

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Mutational spectrum by phenotype: panel-based NGS testing of patients with clinical suspicion of RASopathy and children with multiple café-au-lait macules.
Elisabeth Castellanos, Inma Rosas, Alex Negro, Bernat Gel, Andreu Alibés

Clin Genet· February 2020

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Analysis of Somatic DNA Methylation Alterations of Genes Encoding Cell Surface Metallopeptidases in Colorectal Cancer.
Sergio Alonso, Beatriz González, Andreu Alibés, Manuel Perucho

Methods Mol Biol· January 2019

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Epigenetic and transcriptional dysregulation of VWA2 associated with a MYC-driven oncogenic program in colorectal cancer.
Beatriz González, Ferran Fece de la Cruz, Johanna Kristina Samuelsson, Andreu Alibés, Sergio Alonso

Sci Rep· July 2018

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Helicase Lymphoid-Specific Enzyme Contributes to the Maintenance of Methylation of SST1 Pericentromeric Repeats That Are Frequently Demethylated in Colon Cancer and Associate with Genomic Damage.
Johanna K Samuelsson, Gabrijela Dumbovic, Cristian Polo, Cristina Moreta, Andreu Alibés

Epigenomes· June 2017

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MYCL is a target of a BET bromodomain inhibitor, JQ1, on growth suppression efficacy in small cell lung cancer cells.
Fuyumi Kato, Francesco Paolo Fiorentino, Andreu Alibés, Manuel Perucho, Montse Sánchez-Céspedes

Oncotarget· November 2016

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Computational Prediction of HIV-1 Resistance to Protease Inhibitors.
Ali Hosseini, Andreu Alibés, Marc Noguera-Julian, Victor Gil, Roger Paredes

J Chem Inf Model· May 2016

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Integration of multi-omics data of a genome-reduced bacterium: Prevalence of post-transcriptional regulation and its correlation with protein abundances.
Wei-Hua Chen, Vera van Noort, Maria Lluch-Senar, Marco L Hennrich, Judith A H Wodke

Nucleic Acids Res· February 2016

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MyMpn: a database for the systems biology model organism Mycoplasma pneumoniae.
Judith A H Wodke, Andreu Alibés, Luca Cozzuto, Antonio Hermoso, Eva Yus

Nucleic Acids Res· January 2015

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HumMeth27QCReport: an R package for quality control and primary analysis of Illumina Infinium methylation data.
Francesco M Mancuso, Magda Montfort, Anna Carreras, Andreu Alibés, Guglielmo Roma

BMC Res Notes· December 2011

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DNA-binding specificity prediction with FoldX.
Alejandro D Nadra, Luis Serrano, Andreu Alibés

Methods Enzymol· September 2011

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Using a structural and logics systems approach to infer bHLH-DNA binding specificity determinants.
Federico De Masi, Christian A Grove, Anastasia Vedenko, Andreu Alibés, Stephen S Gisselbrecht

Nucleic Acids Res· June 2011

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Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus.
Inés G Muñoz, Jesús Prieto, Sunita Subramanian, Javier Coloma, Pilar Redondo

Nucleic Acids Res· January 2011

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Structure-based DNA-binding prediction and design.
Andreu Alibés, Luis Serrano, Alejandro D Nadra

Methods Mol Biol· December 2010

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Using protein design algorithms to understand the molecular basis of disease caused by protein-DNA interactions: the Pax6 example.
Andreu Alibés, Alejandro D Nadra, Federico De Masi, Martha L Bulyk, Luis Serrano

Nucleic Acids Res· November 2010

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Crystal structure of I-DmoI in complex with its target DNA provides new insights into meganuclease engineering.
María José Marcaida, Jesús Prieto, Pilar Redondo, Alejandro D Nadra, Andreu Alibés

Proc Natl Acad Sci U S A· November 2008

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Molecular basis of xeroderma pigmentosum group C DNA recognition by engineered meganucleases.
Pilar Redondo, Jesús Prieto, Inés G Muñoz, Andreu Alibés, Francois Stricher

Nature· November 2008

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PaLS: filtering common literature, biological terms and pathway information.
Andreu Alibés, Andrés Cañada, Ramón Díaz-Uriarte

Nucleic Acids Res· July 2008

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Asterias: integrated analysis of expression and aCGH data using an open-source, web-based, parallelized software suite.
Ramón Díaz-Uriarte, Andreu Alibés, Edward R Morrissey, Andrés Cañada, Oscar M Rueda

Nucleic Acids Res· July 2007

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Asterias: a parallelized web-based suite for the analysis of expression and aCGH data.
Andreu Alibés, Edward R Morrissey, Andrés Cañada, Oscar M Rueda, David Casado

Cancer Inform· February 2007

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IDconverter and IDClight: conversion and annotation of gene and protein IDs.
Andreu Alibés, Patricio Yankilevich, Andrés Cañada, Ramón Díaz-Uriarte

BMC Bioinformatics· January 2007

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Contribution of electrostatic interactions, compactness and quaternary structure to protein thermostability: lessons from structural genomics of Thermotoga maritima.
Marc Robinson-Rechavi, Andreu Alibés, Adam Godzik

J Mol Biol· February 2006

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