Publications by authors named "Andrew A Chen"

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Reproducible Brain Charts: An open data resource for mapping brain development and its associations with mental health.
Golia Shafiei, Nathalia B Esper, Mauricio S Hoffmann, Lei Ai, Andrew A Chen

Neuron· November 2025

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Calibration of MRI-based reference intervals to new samples.
Andrew A Chen, Jakob Seidlitz, Margaret Gardner, Richard A I Bethlehem, Lena Dorfschmidt

bioRxiv· November 2025

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Salience Network Connectivity Predicts Response to Repetitive Transcranial Magnetic Stimulation in Smoking Cessation: A Preliminary Machine Learning Study.
Xingbao Li, Kevin A Caulfield, Andrew A Chen, Christopher S McMahan, Karen J Hartwell

Brain Connect· October 2025

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ComBatLS: A Location- and Scale-Preserving Method for Multi-Site Image Harmonization.
Margaret Gardner, Russell T Shinohara, Richard A I Bethlehem, Rafael Romero-Garcia, Varun Warrier, Andrew A Chen

Hum Brain Mapp· June 2025

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Big Data, Small Bias: Harmonizing Diffusion MRI-Based Structural Connectomes to Mitigate Site-Related Bias in Data Integration.
Rui Sherry Shen, Drew Parker, Andrew An Chen, Benjamin E Yerys, Birkan Tunç

Hum Brain Mapp· June 2025

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Accelerated iTBS-Induced changes in resting-state functional connectivity correspond with cognitive improvement in amnestic MCI.
Stephanie Aghamoosa, Sara A Nolin, Andrew A Chen, Kevin A Caulfield, James Lopez

Brain Stimul· May 2025

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Nicotine Pouch Use in Youths and Adults Who Use Cigarettes, E-Cigarettes, and Smokeless Tobacco.
Amanda M Palmer, Tracy T Smith, Andrew A Chen, Alana M Rojewski, Matthew J Carpenter

JAMA Netw Open· May 2025

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Intra-voxel angular dispersion of fibers in corpus callosum decreases with healthy aging.
Hunter G Moss, Andrew A Chen, Jens H Jensen, Andreana Benitez

Imaging Neurosci (Camb)· January 2025

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Subject-Level Segmentation Precision Weights for Volumetric Studies Involving Label Fusion.
Christina Chen, Sandhitsu R Das, M Dylan Tisdall, Fengling Hu, Andrew A Chen

Hum Brain Mapp· December 2024

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Relationship between MRI brain-age heterogeneity, cognition, genetics and Alzheimer's disease neuropathology.
Mathilde Antoniades, Dhivya Srinivasan, Junhao Wen, Guray Erus, Ahmed Abdulkadir, Andrew A Chen, Jiong Chen

EBioMedicine· November 2024

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Similarity-based multimodal regression.
Andrew A Chen, Sarah M Weinstein, Azeez Adebimpe, Ruben C Gur, Raquel E Gur

Biostatistics· October 2024

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Generalizable Links Between Borderline Personality Traits and Functional Connectivity.
Golia Shafiei, Arielle S Keller, Maxwell Bertolero, Sheila Shanmugan, Dani S Bassett, Andrew A Chen

Biol Psychiatry· September 2024

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Optimized Whole-Slide-Image H&E Stain Normalization: A Step Towards Big Data Integration in Digital Pathology.
Jose L Agraz, Carlos Agraz, Andrew A Chen, Charles Rice, Robert S Pozos

IEEE Open J Eng Med Biol· September 2024

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DeepComBat: A statistically motivated, hyperparameter-robust, deep learning approach to harmonization of neuroimaging data.
Fengling Hu, Alfredo Lucas, Andrew A Chen, Kyle Coleman, Hannah Horng

Hum Brain Mapp· August 2024

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PARE: A framework for removal of confounding effects from any distance-based dimension reduction method.
Andrew A Chen, Kelly Clark, Blake E Dewey, Anna DuVal, Nicole Pellegrini

PLoS Comput Biol· July 2024

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ComBatLS: A location- and scale-preserving method for multi-site image harmonization.
Margaret Gardner, Russell T Shinohara, Richard A I Bethlehem, Rafael Romero-Garcia, Varun Warrier, Andrew A Chen

bioRxiv· July 2024

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Functional connectivity development along the sensorimotor-association axis enhances the cortical hierarchy.
Audrey C Luo, Valerie J Sydnor, Adam Pines, Bart Larsen, Aaron F Alexander-Bloch, Andrew A Chen, Chenying Zhao

Nat Commun· April 2024

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Generalizable links between symptoms of borderline personality disorder and functional connectivity.
Golia Shafiei, Arielle S Keller, Maxwell Bertolero, Sheila Shanmugan, Dani S Bassett, Andrew A Chen

bioRxiv· August 2023

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Image harmonization: A review of statistical and deep learning methods for removing batch effects and evaluation metrics for effective harmonization.
Fengling Hu, Andrew A Chen, Hannah Horng, Vishnu Bashyam, Christos Davatzikos, Meichen Yu

Neuroimage· July 2023

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DeepComBat: A Statistically Motivated, Hyperparameter-Robust, Deep Learning Approach to Harmonization of Neuroimaging Data.
Fengling Hu, Alfredo Lucas, Andrew A Chen, Kyle Coleman, Hannah Horng

bioRxiv· April 2023

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Deconfounded Dimension Reduction via Partial Embeddings.
Andrew A Chen, Kelly Clark, Blake Dewey, Anna DuVal, Nicole Pellegrini

bioRxiv· January 2023

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Robust Image Population Based Stain Color Normalization: How Many Reference Slides Are Enough?
Jose L Agraz, Caleb M Grenko, Andrew A Chen, Angela N Viaene, MacLean D Nasrallah

IEEE Open J Eng Med Biol· January 2023

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First-generation clinical dual-source photon-counting CT: ultra-low-dose quantitative spectral imaging.
Leening P Liu, Nadav Shapira, Andrew A Chen, Russell T Shinohara, Pooyan Sahbaee

Eur Radiol· December 2022

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Interpretable surface-based detection of focal cortical dysplasias: a Multi-centre Epilepsy Lesion Detection study.
Hannah Spitzer, Mathilde Ripart, Kirstie Whitaker, Felice D'Arco, Kshitij Mankad, Andrew A Chen

Brain· November 2022

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Immune aging in multiple sclerosis is characterized by abnormal CD4 T cell activation and increased frequencies of cytotoxic CD4 T cells with advancing age.
Leah Zuroff, Ayman Rezk, Koji Shinoda, Diego A Espinoza, Yehezqel Elyahu, Andrew A Chen, Alice Chen-Plotkin

EBioMedicine· August 2022

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